Whole genomes from bacteria collected at diagnostic units around the world 2020

被引：0

作者：

Sidsel Nag

Gunhild Larsen

Judit Szarvas

Laura Elmlund Kohl Birkedahl

Gábor Máté Gulyás

Wojchiech Jakub Ciok

Timmie Mikkel Lagermann

Silva Tafaj

Susan Bradbury

Peter Collignon

Denise Daley

Victorien Dougnon

Kafayath Fabiyi

Boubacar Coulibaly

René Dembélé

Georgette Nikiema

Natama Magloire

Isidore Juste Ouindgueta

Zenat Zebin Hossain

Anowara Begum

Deyan Donchev

Mathew Diggle

LeeAnn Turnbull

Simon Lévesque

Livia Berlinger

Kirstine Kobberoe Sogaard

Paula Diaz Guevara

Carolina Duarte Valderrama

Panagiota Maikanti

Jana Amlerova

Pavel Drevinek

Jan Tkadlec

Milica Dilas

Achim Kaasch

Henrik Torkil Westh

Mohamed Azzedine Bachtarzi

Wahiba Amhis

Carolina Elisabeth Satán Salazar

JoséEduardo Villacis

Mária Angeles Dominguez Lúzon

Dámaris Berbel Palau

Claire Duployez

Maxime Paluche

Solomon Asante-Sefa

Mie Moller

Margaret Ip

Ivana Mareković

Agnes Pál-Sonnevend

Clementiza Elvezia Cocuzza

Asta Dambrauskiene

机构：

[1] Technical University of Denmark,National Food Institute

[2] Kemitorvet,Microbiology Department

[3] Kgs,Research Unit in Applied Microbiology and Pharmacology of Natural Substances, Polytechnic School of Abomey

[4] University Hospital “Shefqet Ndroqi”,Calavi

[5] Rruga Dr. Shefqet Ndroqi. Sauk,Department of Laboratory

[6] Microbiology Department,Training and Research Unit in Applied Sciences and Technologies/Biochemistry

[7] Canberra Hospital,microbiology

[8] Gilmore Cresent,Department of Microbiology

[9] Department of Microbiology,Clinical Laboratory of Microbiology and Virology

[10] PathWest Laboratory Medicine,Division of Clinical Bacteriology and Mycology

[11] Fiona Stanley Hospital,Department of Microbiology

[12] University of Abomey-Calavi,Department of Medical Microbiology

[13] 01 PO Box,Department of Pathology and Experimental Therapy

[14] Abomey-Calavi,Microbiology Department

[15] Nouna Health Research Centre,Institute of Microbiology

[16] Rue Namory Keita,Department of Clinical and Molecular Microbiology

[17] University of Dedougou,Medical Microbiology and Immunology

[18] Clinical Research Unit of Nanoro,Department of Medicine and Surgery

[19] National Institutes of Medical Research,Laboratory Medicine Department

[20] Department,Faculty of Pharmacy

[21] University of Joseph KI-ZERBO,College of Medicine

[22] Street,Department of Microbiology and Infection Control

[23] University of Dhaka,Southern Community Laboratories

[24] University Hospital “Lozenetz”,Department of Industrial Biotechnology, Atta

[25] Str. Kozyak 1,ur

[26] Sofia,Rahman School of Applied Biosciences

[27] Alberta Precision Laboratories,Molecular Diagnostic Section

[28] Service de microbiologie,Departamento de Bacteriologia

[29] Centre Integré Universitaire de Santé et de services sociaux de l’Estrie - Centre Hospitalier Universitaire de Sherbrooke,Basic Medical Sciences Department

[30] Department,Division of Clinical Microbiology

[31] Bioanalytica AG,Department of Clinical Tropical Medicine, Faculty of Tropical Medicine

[32] University Hospital Basel,Department of Medical Sciences

[33] Microbiology Group,Medical Microbiology Department

[34] Instituto Nacional de Salud,undefined

[35] Charalampous,undefined

[36] Microbiology Department,undefined

[37] National Reference Laboratory for Antimicrobial Resistance Surveillance,undefined

[38] Nicosia General Hospital,undefined

[39] 215,undefined

[40] Paleos Dromos Lefkosia-Lemesos str.,undefined

[41] Strovolos,undefined

[42] University Hospital in Plzen,undefined

[43] Motol University Hospital,undefined

[44] Otto-von-Guericke University,undefined

[45] Klinisk Mikrobiologisk Afdeling,undefined

[46] Hvidovre Hospital,undefined

[47] Kettegårds Allé,undefined

[48] Laboratoire de Microbiologie Clinique,undefined

[49] Centre Hospitalo-universitaire,undefined

[50] National Reference Center for Antimicrobial Resistance,undefined

来源：

Scientific Data | / 10卷

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摘要：

The Two Weeks in the World research project has resulted in a dataset of 3087 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units in 35 countries around the world during 2020. A relational database is available with metadata and summary data from selected bioinformatic analysis, such as species prediction and identification of acquired resistance genes.

引用

共 37 条

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[34] Lessons learned through innovation in medical education A peer-reviewed collection of short reports from around the world on innovative approaches to medical education May 2020
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[35] Isolation, whole-genome sequencing, and annotation of two antibiotic-producing and antibiotic-resistant bacteria, Pantoea rodasii RIT 836 and Pseudomonas endophytica RIT 838, collected from the environment
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Yerly, Sabine
Opota, Onya
Pillonel, Trestan
Schuster, Tobias
Metzger, Cesar M. J. A.
Sieber, Jonas
Bel, Michael
Wohlwend, Nadia
Baumann, Christian
Koch, Michel C.
Bittel, Pascal
Leuzinger, Karoline
Brunner, Myrta
Suter-Riniker, Franziska
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Sogaard, Kirstine K.
Beckmann, Christiane
Noppen, Christoph
Redondo, Maurice
Steffen, Ingrid
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Mari, Alfredo
Lienhard, Reto
Risch, Martin
Nolte, Oliver
Eckerle, Isabella
Lucchini, Gladys Martinetti
Hodcroft, Emma B.
Neher, Richard A.
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