Whole genomes from bacteria collected at diagnostic units around the world 2020

被引：0

作者：

Sidsel Nag

Gunhild Larsen

Judit Szarvas

Laura Elmlund Kohl Birkedahl

Gábor Máté Gulyás

Wojchiech Jakub Ciok

Timmie Mikkel Lagermann

Silva Tafaj

Susan Bradbury

Peter Collignon

Denise Daley

Victorien Dougnon

Kafayath Fabiyi

Boubacar Coulibaly

René Dembélé

Georgette Nikiema

Natama Magloire

Isidore Juste Ouindgueta

Zenat Zebin Hossain

Anowara Begum

Deyan Donchev

Mathew Diggle

LeeAnn Turnbull

Simon Lévesque

Livia Berlinger

Kirstine Kobberoe Sogaard

Paula Diaz Guevara

Carolina Duarte Valderrama

Panagiota Maikanti

Jana Amlerova

Pavel Drevinek

Jan Tkadlec

Milica Dilas

Achim Kaasch

Henrik Torkil Westh

Mohamed Azzedine Bachtarzi

Wahiba Amhis

Carolina Elisabeth Satán Salazar

JoséEduardo Villacis

Mária Angeles Dominguez Lúzon

Dámaris Berbel Palau

Claire Duployez

Maxime Paluche

Solomon Asante-Sefa

Mie Moller

Margaret Ip

Ivana Mareković

Agnes Pál-Sonnevend

Clementiza Elvezia Cocuzza

Asta Dambrauskiene

机构：

[1] Technical University of Denmark,National Food Institute

[2] Kemitorvet,Microbiology Department

[3] Kgs,Research Unit in Applied Microbiology and Pharmacology of Natural Substances, Polytechnic School of Abomey

[4] University Hospital “Shefqet Ndroqi”,Calavi

[5] Rruga Dr. Shefqet Ndroqi. Sauk,Department of Laboratory

[6] Microbiology Department,Training and Research Unit in Applied Sciences and Technologies/Biochemistry

[7] Canberra Hospital,microbiology

[8] Gilmore Cresent,Department of Microbiology

[9] Department of Microbiology,Clinical Laboratory of Microbiology and Virology

[10] PathWest Laboratory Medicine,Division of Clinical Bacteriology and Mycology

[11] Fiona Stanley Hospital,Department of Microbiology

[12] University of Abomey-Calavi,Department of Medical Microbiology

[13] 01 PO Box,Department of Pathology and Experimental Therapy

[14] Abomey-Calavi,Microbiology Department

[15] Nouna Health Research Centre,Institute of Microbiology

[16] Rue Namory Keita,Department of Clinical and Molecular Microbiology

[17] University of Dedougou,Medical Microbiology and Immunology

[18] Clinical Research Unit of Nanoro,Department of Medicine and Surgery

[19] National Institutes of Medical Research,Laboratory Medicine Department

[20] Department,Faculty of Pharmacy

[21] University of Joseph KI-ZERBO,College of Medicine

[22] Street,Department of Microbiology and Infection Control

[23] University of Dhaka,Southern Community Laboratories

[24] University Hospital “Lozenetz”,Department of Industrial Biotechnology, Atta

[25] Str. Kozyak 1,ur

[26] Sofia,Rahman School of Applied Biosciences

[27] Alberta Precision Laboratories,Molecular Diagnostic Section

[28] Service de microbiologie,Departamento de Bacteriologia

[29] Centre Integré Universitaire de Santé et de services sociaux de l’Estrie - Centre Hospitalier Universitaire de Sherbrooke,Basic Medical Sciences Department

[30] Department,Division of Clinical Microbiology

[31] Bioanalytica AG,Department of Clinical Tropical Medicine, Faculty of Tropical Medicine

[32] University Hospital Basel,Department of Medical Sciences

[33] Microbiology Group,Medical Microbiology Department

[34] Instituto Nacional de Salud,undefined

[35] Charalampous,undefined

[36] Microbiology Department,undefined

[37] National Reference Laboratory for Antimicrobial Resistance Surveillance,undefined

[38] Nicosia General Hospital,undefined

[39] 215,undefined

[40] Paleos Dromos Lefkosia-Lemesos str.,undefined

[41] Strovolos,undefined

[42] University Hospital in Plzen,undefined

[43] Motol University Hospital,undefined

[44] Otto-von-Guericke University,undefined

[45] Klinisk Mikrobiologisk Afdeling,undefined

[46] Hvidovre Hospital,undefined

[47] Kettegårds Allé,undefined

[48] Laboratoire de Microbiologie Clinique,undefined

[49] Centre Hospitalo-universitaire,undefined

[50] National Reference Center for Antimicrobial Resistance,undefined

来源：

Scientific Data | / 10卷

关键词：

D O I：

暂无

中图分类号：

学科分类号：

摘要：

The Two Weeks in the World research project has resulted in a dataset of 3087 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units in 35 countries around the world during 2020. A relational database is available with metadata and summary data from selected bioinformatic analysis, such as species prediction and identification of acquired resistance genes.

引用

共 37 条

[1] Whole genomes from bacteria collected at diagnostic units around the world 2020
Nag, Sidsel
Larsen, Gunhild
Szarvas, Judit
Birkedahl, Laura Elmlund Kohl
Gulyas, Gabor Mate
Ciok, Wojchiech Jakub
Lagermann, Timmie Mikkel
Tafaj, Silva
Bradbury, Susan
Collignon, Peter
Daley, Denise
Dougnon, Victorien
Fabiyi, Kafayath
Coulibaly, Boubacar
Dembele, Rene
Nikiema, Georgette
Magloire, Natama
Ouindgueta, Isidore Juste
Hossain, Zenat Zebin
Begum, Anowara
Donchev, Deyan
Diggle, Mathew
Turnbull, Leeann
Levesque, Simon
Berlinger, Livia
Sogaard, Kirstine Kobberoe
Guevara, Paula Diaz
Valderrama, Carolina Duarte
Maikanti, Panagiota
Amlerova, Jana
Drevinek, Pavel
Tkadlec, Jan
Dilas, Milica
Kaasch, Achim
Westh, Henrik Torkil
Bachtarzi, Mohamed Azzedine
Amhis, Wahiba
Salazar, Carolina Elisabeth Satan
Villacis, JoseEduardo
Luzon, Maria Angeles Dominguez
Palau, Damaris Berbel
Duployez, Claire
Paluche, Maxime
Asante-Sefa, Solomon
Moller, Mie
Ip, Margaret
Marekovic, Ivana
Pal-Sonnevend, Agnes
Cocuzza, Clementiza Elvezia
Dambrauskiene, Asta
SCIENTIFIC DATA, 2023, 10 (01)
[2] Direct Transfer of Whole Genomes from Bacteria to Yeast
Karas, B. J.
Jablanovic, J.
Sun, L.
Goldgof, G. M.
Stam, J.
Ramon, A.
Manary, M. J.
Venter, J. C.
Weyman, P. D.
Gibson, D. G.
Glass, J. I.
Hutchison, C. A., III
Smith, H. O.
Suzuki, Y.
MOLECULAR BIOLOGY OF THE CELL, 2013, 24
[3] Direct transfer of whole genomes from bacteria to yeast
Karas B.J.
Jablanovic J.
Sun L.
Ma L.
Goldgof G.M.
Stam J.
Ramon A.
Manary M.J.
Winzeler E.A.
Venter J.C.
Weyman P.D.
Gibson D.G.
Glass J.I.
Hutchison III C.A.
Smith H.O.
Suzuki Y.
Nature Methods, 2013, 10 (5) : 410 - 412
[4] Direct transfer of whole genomes from bacteria to yeast
Karas, Bogumil J.
Jablanovic, Jelena
Sun, Lijie
Ma, Li
Goldgof, Gregory M.
Stam, Jason
Ramon, Adi
Manary, Micah J.
Winzeler, Elizabeth A.
Venter, J. Craig
Weyman, Philip D.
Gibson, Daniel G.
Glass, John I.
Hutchison, Clyde A., III
Smith, Hamilton O.
Suzuki, Yo
NATURE METHODS, 2013, 10 (05) : 410 - +
[5] Is the Whole World Watching? Building a Typology of Protest Coverage on Social Media From Around the World
Harlow, Summer
Kilgo, Danielle K.
Salaverria, Ramon
Garcia-Perdomo, Victor
JOURNALISM STUDIES, 2020, 21 (11) : 1590 - 1608
[6] Prevalence of Antibiotic Resistant Bacteria in Water Samples Collected From in and Around a Suburban Area of Chennai
Farhana, R.
Amutha, Arul
Revaty, A. R.
INDIAN JOURNAL OF PHARMACOLOGY, 2014, 46 : S57 - S57
[7] Aspergillus, Penicillium and Talaromyces isolated from house dust samples collected around the world
Visagie, C. M.
Hirooka, Y.
Tanney, J. B.
Whitfield, E.
Mwange, K.
Meijer, M.
Amend, A. S.
Seifert, K. A.
Samson, R. A.
STUDIES IN MYCOLOGY, 2014, (78) : 63 - 139
[8] Preliminary: Trends and Seroprevalence of T. cruzi in Colombian Whole Blood Units Collected from 1995 to 2010
Berrio-Perez, M.
Beltran Duran, M.
Bermudez-Forero, M.
Gomez, G.
Gardeazabal, Pa
Hilarion, L.
Galindo, D.
Cifuentes, E.
Orjuela, A.
TRANSFUSION, 2015, 55 : 196A - 196A
[9] Transferring whole genomes from bacteria to yeast spheroplasts using entire bacterial cells to reduce DNA shearing
Karas, Bogumil J.
Jablanovic, Jelena
Irvine, Edward
Sun, Lijie
Ma, Li
Weyman, Philip D.
Gibson, Daniel G.
Glass, John I.
Venter, J. Craig
Hutchison, Clyde A., III
Smith, Hamilton O.
Suzuki, Yo
NATURE PROTOCOLS, 2014, 9 (04) : 743 - 750
[10] Transferring whole genomes from bacteria to yeast spheroplasts using entire bacterial cells to reduce DNA shearing
Bogumil J Karas
Jelena Jablanovic
Edward Irvine
Lijie Sun
Li Ma
Philip D Weyman
Daniel G Gibson
John I Glass
J Craig Venter
Clyde A Hutchison
Hamilton O Smith
Yo Suzuki
Nature Protocols, 2014, 9 : 743 - 750

← 1 2 3 4 →