Pairwise compatibility graphs

被引:24
|
作者
Yanhaona, Muhammad Nur [1 ]
Hossain, K. S. M. Tozammel [1 ]
Rahman, M. Saidur [1 ]
机构
[1] Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology (BUET), Dhaka 1000, Bangladesh
关键词
Graphs; Pairwise compatibility graphs; Bioinformatics; Phylogeny; Tree construction; 68R10; 05C75; 05C85; 92D15;
D O I
10.1007/s12190-008-0204-7
中图分类号
学科分类号
摘要
Given an edge weighted tree T and two non-negative real numbers dmin  and dmax , a pairwise compatibility graph (PCG) of T is a graph G=(V,E), where each vertex u∈V corresponds to a leaf u of T and an edge (u,v)∈E if and only if dmin ≤distance(u,v)≤dmax  in T. In this paper we give some properties of these graphs. We establish a relationship between pairwise compatibility graphs and chordal graphs. We show that all chordless cycles and single chord cycles are pairwise compatibility graphs. We also provide a linear-time algorithm for constructing trees that can generate graphs having cycles as their maximal biconnected subgraphs as PCGs. The techniques that we used to identify various types of pairwise compatibility graphs are quite generic and may be useful to discover other properties of these graphs.
引用
收藏
页码:479 / 503
页数:24
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