Pairwise compatibility graphs

被引:24
|
作者
Yanhaona, Muhammad Nur [1 ]
Hossain, K. S. M. Tozammel [1 ]
Rahman, M. Saidur [1 ]
机构
[1] Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology (BUET), Dhaka 1000, Bangladesh
关键词
Graphs; Pairwise compatibility graphs; Bioinformatics; Phylogeny; Tree construction; 68R10; 05C75; 05C85; 92D15;
D O I
10.1007/s12190-008-0204-7
中图分类号
学科分类号
摘要
Given an edge weighted tree T and two non-negative real numbers dmin  and dmax , a pairwise compatibility graph (PCG) of T is a graph G=(V,E), where each vertex u∈V corresponds to a leaf u of T and an edge (u,v)∈E if and only if dmin ≤distance(u,v)≤dmax  in T. In this paper we give some properties of these graphs. We establish a relationship between pairwise compatibility graphs and chordal graphs. We show that all chordless cycles and single chord cycles are pairwise compatibility graphs. We also provide a linear-time algorithm for constructing trees that can generate graphs having cycles as their maximal biconnected subgraphs as PCGs. The techniques that we used to identify various types of pairwise compatibility graphs are quite generic and may be useful to discover other properties of these graphs.
引用
收藏
页码:479 / 503
页数:24
相关论文
共 50 条
  • [1] Pairwise compatibility graphs
    Yanhaona, Muhammad Nur
    Hossain, K. S. M. Tozammel
    Rahman, Md. Saidur
    WALCOM: ALGORITHMS AND COMPUTATION, PROCEEDINGS, 2008, 4921 : 222 - +
  • [2] DISCOVERING PAIRWISE COMPATIBILITY GRAPHS
    Yanhaona, Muhammad Nur
    Bayzid, Md. Shamsuzzoha
    Rahman, Md. Saidur
    DISCRETE MATHEMATICS ALGORITHMS AND APPLICATIONS, 2010, 2 (04) : 607 - 623
  • [3] On Generalizations of Pairwise Compatibility Graphs
    Calamoneri, Tiziana
    Lafond, Manuel
    Monti, Angelo
    Sinaimeri, Blerina
    DISCRETE MATHEMATICS AND THEORETICAL COMPUTER SCIENCE, 2024, 26 (03):
  • [4] Pairwise Compatibility Graphs Revisited
    Mehnaz, Shagufta
    Rahman, Md. Sohel
    2013 INTERNATIONAL CONFERENCE ON INFORMATICS, ELECTRONICS & VISION (ICIEV), 2013,
  • [5] Exploring pairwise compatibility graphs
    Calamoneri, T.
    Montefusco, E.
    Petreschi, R.
    Sinaimeri, B.
    THEORETICAL COMPUTER SCIENCE, 2013, 468 : 23 - 36
  • [6] Discovering Pairwise Compatibility Graphs
    Yanhaona, Muhammad Nur
    Bayzid, Md. Shamsuzzoha
    Rahman, Md. Saidur
    COMPUTING AND COMBINATORICS, 2010, 6196 : 399 - 408
  • [7] Pairwise Compatibility Graphs: A Survey
    Calamoneri, Tiziana
    Sinaimeri, Blerina
    SIAM REVIEW, 2016, 58 (03) : 445 - 460
  • [8] Pairwise Compatibility Graphs of Caterpillars
    Calamoneri, Tiziana
    Frangioni, Antonio
    Sinaimeri, Blerina
    COMPUTER JOURNAL, 2014, 57 (11): : 1616 - 1623
  • [9] A survey on pairwise compatibility graphs
    Rahman, Md. Saidur
    Ahmed, Shareef
    AKCE INTERNATIONAL JOURNAL OF GRAPHS AND COMBINATORICS, 2020, 17 (03) : 788 - 795
  • [10] New results on pairwise compatibility graphs
    Hakim, Sheikh Azizul
    Papan, Bishal Basak
    Rahman, Md. Saidur
    INFORMATION PROCESSING LETTERS, 2022, 178