Automatic real-time monitoring of fungal spores: the case of Alternaria spp.

被引:0
|
作者
Sophie Erb
Alexis Berne
Nina Burgdorfer
Bernard Clot
Marie-José Graber
Gian Lieberherr
Christine Sallin
Fiona Tummon
Benoît Crouzy
机构
[1] MeteoSwiss,Surface Measurements
[2] École Polytechnique Fédérale de Lausanne,Environmental Remote Sensing Laboratory
来源
Aerobiologia | 2024年 / 40卷
关键词
Fungal spores; Automatic monitoring; Machine learning; Real-time;
D O I
暂无
中图分类号
学科分类号
摘要
We present the first implementation of the monitoring of airborne fungal spores in real-time using digital holography. To obtain observations of Alternaria spp. spores representative of their airborne stage, we collected events measured in the air during crop harvesting in a contaminated potato field, using a Swisens Poleno device. The classification algorithm used by MeteoSwiss for operational pollen monitoring was extended by training the system using this additional dataset. The quality of the retrieved concentrations is evaluated by comparison with parallel measurements made with a manual Hirst-type trap. Correlations between the two measurements are high, especially over the main dispersion period of Alternaria spp., demonstrating the potential for automatic real-time monitoring of fungal spores.
引用
收藏
页码:123 / 127
页数:4
相关论文
共 50 条
  • [1] Automatic real-time monitoring of fungal spores: the case of Alternaria spp.
    Erb, Sophie
    Berne, Alexis
    Burgdorfer, Nina
    Clot, Bernard
    Graber, Marie-Jose
    Lieberherr, Gian
    Sallin, Christine
    Tummon, Fiona
    Crouzy, Benoit
    AEROBIOLOGIA, 2024, 40 (01) : 123 - 127
  • [2] Quantification of disease progression of Alternaria spp. on potato using real-time PCR
    Leiminger, J.
    Bassler, E.
    Knappe, C.
    Bahnweg, G.
    Hausladen, H.
    EUROPEAN JOURNAL OF PLANT PATHOLOGY, 2015, 141 (02) : 295 - 309
  • [3] Quantification of disease progression of Alternaria spp. on potato using real-time PCR
    J. Leiminger
    E. Bäßler
    C. Knappe
    G. Bahnweg
    H. Hausladen
    European Journal of Plant Pathology, 2015, 141 : 295 - 309
  • [4] Triplex Real-Time PCR Approach for the Detection of Crucial Fungal Berry Pathogens-Botrytis spp., Colletotrichum spp. and Verticillium spp.
    Malarczyk, Dominika G.
    Panek, Jacek
    Frac, Magdalena
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2020, 21 (22) : 1 - 17
  • [5] A real-time reverse-transcriptase PCR technique for detection and quantification of viable Alternaria spp. in foodstuffs
    Angel Pavon, Miguel
    Gonzalez, Isabel
    Martin, Rosario
    Garcia, Teresa
    FOOD CONTROL, 2012, 28 (02) : 286 - 294
  • [6] Novel strongyloides spp. real-time PCR
    Krammel, S.
    Erttmann, K.
    Brattig, N.
    Fleischer, B.
    Drosten, C.
    Panning, M.
    INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY, 2007, 297 : 13 - 14
  • [7] Detection of Campylobacter spp., Salmonella spp., and Shigella spp. enteropathogens by real-time multiplex PCR
    Barletta, F.
    Lluque, A.
    Cleary, T.
    Ochoa, T.
    TROPICAL MEDICINE & INTERNATIONAL HEALTH, 2011, 16 : 255 - 256
  • [8] Evaluation of a triplex real-time PCR system to detect the plant-pathogenic molds Alternaria spp., Fusarium spp. and C. purpurea
    Grube, Sabrina
    Schoenling, Jutta
    Prange, Alexander
    JOURNAL OF MICROBIOLOGICAL METHODS, 2015, 119 : 180 - 188
  • [9] Real-time PCR monitoring of fungal development in Arabidopsis thaliana infected by Alternaria brassicicola and Botrytis cinerea
    Gachon, C
    Saindrenan, P
    PLANT PHYSIOLOGY AND BIOCHEMISTRY, 2004, 42 (05) : 367 - 371
  • [10] Real-time antifungal susceptibility testing of Mucor spp., Fusarium spp. and Scedosporium spp. by isothermal microcalorimetry
    Furustrand, U.
    Maiolo, E.
    Hauser, P.
    Bille, J.
    Trampuz, A.
    MYCOSES, 2011, 54 : 168 - 168