Accuracy of imputation to whole-genome sequence data in Holstein Friesian cattle

被引:0
|
作者
Rianne van Binsbergen
Marco CAM Bink
Mario PL Calus
Fred A van Eeuwijk
Ben J Hayes
Ina Hulsegge
Roel F Veerkamp
机构
[1] Wageningen UR Livestock Research,Animal Breeding and Genomics Centre
[2] Wageningen University and Research Centre,Biometris
[3] Department of Environment and Primary Industries,Biosciences Research Division
关键词
Minor Allele Frequency; Genomic Prediction; Imputation Accuracy; Reference Individual; Impute Genotype;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [21] Genomewide Association Analyses of Lactation Persistency and Milk Production Traits in Holstein Cattle Based on Imputed Whole-Genome Sequence Data
    Pedrosa, Victor B.
    Schenkel, Flavio S.
    Chen, Shi-Yi
    Oliveira, Hinayah R.
    Casey, Theresa M.
    Melka, Melkaye G.
    Brito, Luiz F.
    [J]. GENES, 2021, 12 (11)
  • [22] Comparison among three variant callers and assessment of the accuracy of imputation from SNP array data to whole-genome sequence level in chicken
    Ni, Guiyan
    Strom, Tim M.
    Pausch, Hubert
    Reimer, Christian
    Preisinger, Rudolf
    Simianer, Henner
    Erbe, Malena
    [J]. BMC GENOMICS, 2015, 16
  • [23] Comparison among three variant callers and assessment of the accuracy of imputation from SNP array data to whole-genome sequence level in chicken
    Guiyan Ni
    Tim M. Strom
    Hubert Pausch
    Christian Reimer
    Rudolf Preisinger
    Henner Simianer
    Malena Erbe
    [J]. BMC Genomics, 16
  • [24] Association analysis for udder index and milking speed with imputed whole-genome sequence variants in Nordic Holstein cattle
    Jardim, Julia Gazzoni
    Guldbrandtsen, Bernt
    Lund, Mogens Sando
    Sahana, Goutam
    [J]. JOURNAL OF DAIRY SCIENCE, 2018, 101 (03) : 2199 - 2212
  • [25] Association analysis for young stock survival index with imputed whole-genome sequence variants in Nordic Holstein cattle
    Wu, Xiaoping
    Guldbrandtsen, Bernt
    Nielsen, Ulrik Sander
    Lund, Mogens Sando
    Sahana, Goutam
    [J]. JOURNAL OF DAIRY SCIENCE, 2017, 100 (08) : 6356 - 6370
  • [26] Accuracy of genomic prediction using imputed whole-genome sequence data in white layers
    Heidaritabar, M.
    Calus, M. P. L.
    Megens, H-J.
    Vereijken, A.
    Groenen, M. A. M.
    Bastiaansen, J. W. M.
    [J]. JOURNAL OF ANIMAL BREEDING AND GENETICS, 2016, 133 (03) : 167 - 179
  • [27] Prediction of whole-genome risk for selection and management of hyperketonemia in Holstein dairy cattle
    Weigel, K. A.
    Pralle, R. S.
    Adams, H.
    Cho, K.
    Do, C.
    White, H. M.
    [J]. JOURNAL OF ANIMAL BREEDING AND GENETICS, 2017, 134 (03) : 275 - 285
  • [28] Identification of loci associated with pathological outcomes in Holstein cattle infected with Mycobacterium avium subsp. paratuberculosis using whole-genome sequence data
    Maria Canive
    Gerard Badia-Bringué
    Patricia Vázquez
    Oscar González-Recio
    Almudena Fernández
    Joseba M. Garrido
    Ramón A. Juste
    Marta Alonso-Hearn
    [J]. Scientific Reports, 11
  • [29] Detection and evaluation of parameters influencing the identification of heterozygous-enriched regions in Holstein cattle based on SNP chip or whole-genome sequence data
    Mulim, Henrique A.
    Pedrosa, Victor B.
    Pinto, Luis Fernando Batista
    Tiezzi, Francesco
    Maltecca, Christian
    Schenkel, Flavio S.
    Brito, Luiz F.
    [J]. BMC GENOMICS, 2024, 25 (01):
  • [30] Relationship Estimation from Whole-Genome Sequence Data
    Li, Hong
    Glusman, Gustavo
    Hu, Hao
    Shankaracharya
    Caballero, Juan
    Hubley, Robert
    Witherspoon, David
    Guthery, Stephen L.
    Mauldin, Denise E.
    Jorde, Lynn B.
    Hood, Leroy
    Roach, Jared C.
    Huff, Chad D.
    [J]. PLOS GENETICS, 2014, 10 (01):