Genome-Wide Identification and Expression Profiling of the FORMIN Gene Family Implies Their Potential Functions in Abiotic Stress Tolerance in Rice (Oryza sativa)

被引:0
|
作者
Bin Li
Zhiye Du
Nan Jiang
Shan He
Yang Shi
Kai Xiao
Lijia Xu
Kaishun Wang
Xin Wang
Longying Wu
Ji Chen
Jin Huang
机构
[1] Chengdu University of Technology,College of Ecology and Environment
[2] Sichuan Agricultural University,College of Agronomy
来源
关键词
FORMINs; Genome-wide analysis; Drought stress; Cadmium stress;
D O I
暂无
中图分类号
学科分类号
摘要
FORMIN proteins, which contain FH1 and FH2 domains, play crucial roles in the growth and development of organisms. However, the functions of FORMINs in rice (Oryza sativa) remain largely unclear. In this study, a total of 17 FORMIN genes in rice genome were identified, and their distribution on chromosomes, gene structure, as well as protein structure were investigated. According to their protein structural and phylogenetic features, these 17 rice FORMIN genes were classified into two distinct subfamilies. The results of subcellular localization prediction showed that rice FORMINs were located in cytosol, Golgi complex, endoplasmic reticulum, extracellular, or vacuole. Protein–protein interaction (PPI) prediction results showed that FORMIN proteins might answer hormone signals and be involved in cytoskeleton dynamics regulation and cell wall morphology regulation. The gene expression analysis by using qRT-PCR indicated that a number of rice FORMIN genes were induced by auxin/indole-3-acetic acid (Aux/IAA) and abscisic acid (ABA). Importantly, some of the FORMIN genes also exhibited cadmium (Cd) and drought stress-responding expression patterns, suggesting that FORMIN genes may play roles in rice while dealing with drought or Cd stress. Overall, our research may shed light on the understanding of the biological functions of rice FORMINs.
引用
收藏
页码:573 / 586
页数:13
相关论文
共 50 条
  • [41] Genome-wide analysis and environmental response profiling of SOT family genes in rice (Oryza sativa)
    Rongjun Chen
    Yunyun Jiang
    Jiali Dong
    Xin Zhang
    Hongbo Xiao
    Zhengjun Xu
    Xiaoling Gao
    Genes & Genomics, 2012, 34 : 549 - 560
  • [42] Genome-wide identification and functional characterization of the Camelina sativa WRKY gene family in response to abiotic stress
    Song, Yanan
    Cui, Hongli
    Shi, Ying
    Xue, Jinai
    Ji, Chunli
    Zhang, Chunhui
    Yuan, Lixia
    Li, Runzhi
    BMC GENOMICS, 2020, 21 (01)
  • [43] Genome-Wide Analysis of the IQM Gene Family in Rice (Oryza sativa L.)
    Fan, Tian
    Lv, Tianxiao
    Xie, Chuping
    Zhou, Yuping
    Tian, Changen
    PLANTS-BASEL, 2021, 10 (09):
  • [44] Genome-wide identification and functional characterization of the Camelina sativa WRKY gene family in response to abiotic stress
    Yanan Song
    Hongli Cui
    Ying Shi
    Jinai Xue
    Chunli Ji
    Chunhui Zhang
    Lixia Yuan
    Runzhi Li
    BMC Genomics, 21
  • [45] Genome-Wide Identification and Expression Profiling of the BES1 Gene Family in Medicago sativa
    Chen, Zhengqiang
    Chen, Fangqi
    Jia, Ruifang
    Qin, Yaxuan
    Zhang, Yuanyuan
    Lin, Kejian
    AGRONOMY-BASEL, 2024, 14 (10):
  • [46] Genome-wide identification and expression profiling of the WRKY gene family reveals abiotic stress response mechanisms in Platycodon grandiflorus
    Yu, Hanwen
    Li, Jing
    Chang, Xiangwei
    Dong, Nan
    Chen, Bowen
    Wang, Jutao
    Zha, Liangping
    Gui, Shuangying
    INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2024, 257
  • [47] Genome-wide analysis and environmental response profiling of dirigent family genes in rice (Oryza sativa)
    Yongrong Liao
    Shengbin Liu
    Yunyun Jiang
    Changqiong Hu
    Xuewei Zhang
    Xufeng Cao
    Zhengjun Xu
    Xiaoling Gao
    Lihua Li
    Jianqing Zhu
    Rongjun Chen
    Genes & Genomics, 2017, 39 : 47 - 62
  • [48] Genome-wide analysis and environmental response profiling of SOT family genes in rice (Oryza sativa)
    Chen, Rongjun
    Jiang, Yunyun
    Dong, Jiali
    Zhang, Xin
    Xiao, Hongbo
    Xu, Zhengjun
    Gao, Xiaoling
    GENES & GENOMICS, 2012, 34 (05) : 549 - 560
  • [49] Genome-Wide Identification of NAC Gene Family and Expression Analysis under Abiotic Stresses in Avena sativa
    Ling, Lei
    Li, Mingjing
    Chen, Naiyu
    Xie, Xinying
    Han, Zihui
    Ren, Guoling
    Yin, Yajie
    Jiang, Huixin
    GENES, 2023, 14 (06)
  • [50] Genome-wide association mapping of salinity tolerance in rice (Oryza sativa)
    Kumar, Vinod
    Singh, Anshuman
    Mithra, S. V. Amitha
    Krishnamurthy, S. L.
    Parida, Swarup K.
    Jain, Sourabh
    Tiwari, Kapil K.
    Kumar, Pankaj
    Rao, Atmakuri R.
    Sharma, S. K.
    Khurana, Jitendra P.
    Singh, Nagendra K.
    Mohapatra, Trilochan
    DNA RESEARCH, 2015, 22 (02) : 133 - 145