Genome-wide characterization of intergenic polyadenylation sites redefines gene spaces in Arabidopsis thaliana

被引:0
|
作者
Xiaohui Wu
Yong Zeng
Jinting Guan
Guoli Ji
Rongting Huang
Qingshun Q. Li
机构
[1] Xiamen University,Department of Automation
[2] College of the Environment and Ecology,Key Laboratory of the Ministry of Education on Costal Wetland Ecosystems
[3] Xiamen University,Rice Research Institute
[4] Graduate College of Biomedical Sciences,Innovation Center for Cell Signaling Network
[5] Western University of Health Sciences,undefined
[6] Fujian Academy of Agricultural Sciences,undefined
[7] Xiamen University,undefined
来源
BMC Genomics | / 16卷
关键词
Alternative polyadenylation; RNA processing; Genome annotation; Intergenic region; 3’-UTR;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [41] Genome-Wide Analysis of the Distinct Types of Chromatin Interactions in Arabidopsis thaliana
    Wang, Jingjing
    Zhou, Yincong
    Li, Xue
    Meng, Xianwen
    Fan, Miao
    Chen, Hongjun
    Xue, Jitong
    Chen, Ming
    PLANT AND CELL PHYSIOLOGY, 2017, 58 (01) : 57 - 70
  • [42] Genome-wide modeling and analysis of BAR Domains in Arabidopsis thaliana.
    Brasse, Deoranie Nikita
    Abdel-Naby, Ramy
    Singh, Shaneen M.
    BIOPHYSICAL JOURNAL, 2009, 96 (03) : 652A - 652A
  • [43] Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana
    Borevitz, Justin O.
    Hazen, Samuel P.
    Michael, Todd P.
    Morris, Geoffrey P.
    Baxter, Ivan R.
    Hu, Tina T.
    Chen, Huaming
    Werner, Jonathan D.
    Nordborg, Magnus
    Salf, David E.
    Kay, Steve A.
    Chory, Joanne
    Weigel, Detlef
    Jones, Jonathan D. G.
    Ecker, Joseph R.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (29) : 12057 - 12062
  • [44] Genome-wide analysis of brassinosteroid responsive small RNAs in Arabidopsis thaliana
    So Young Park
    Jae-Han Choi
    Dong-Ha Oh
    John C. Johnson
    Maheshi Dassanayake
    Dong-Hoon Jeong
    Man-Ho Oh
    Genes & Genomics, 2020, 42 : 957 - 969
  • [45] Genome-wide characterization of PEBP gene family in Perilla frutescens and PfFT1 promotes flowering time in Arabidopsis thaliana
    Xu, Huaxiang
    Guo, Xi
    Hao, Youjin
    Lu, Geng
    Li, Dan
    Lu, Junxing
    Zhang, Tao
    FRONTIERS IN PLANT SCIENCE, 2022, 13
  • [46] Genome-wide characterization and functional analysis of the melon TGA gene family in disease resistance through ectopic overexpression in Arabidopsis thaliana
    Tian, Miao
    Dai, Yujie
    Noman, Muhammad
    Li, Ruotong
    Li, Xiaodan
    Wu, Xinyi
    Wang, Hui
    Song, Fengming
    Li, Dayong
    PLANT PHYSIOLOGY AND BIOCHEMISTRY, 2024, 212
  • [47] Genome-wide comparative analysis and expression pattern of TCP gene families in Arabidopsis thaliana and Oryza sativa
    Yao, Xuan
    Ma, Hong
    Wang, Jian
    Zhang, Dabing
    JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2007, 49 (06) : 885 - 897
  • [48] Monitoring genome-wide changes in gene expression in response to endogenous cytokinin reveals targets in Arabidopsis thaliana
    Hoth, S
    Ikeda, Y
    Morgante, M
    Wang, XJ
    Zuo, JR
    Hanafey, MK
    Gaasterland, T
    Tingey, SV
    Chua, NH
    FEBS LETTERS, 2003, 554 (03) : 373 - 380
  • [49] A genome-wide survey of R gene polymorphisms in Arabidopsis
    Bakker, Erica G.
    Toomajian, Christopher
    Kreitman, Martin
    Bergelson, Joy
    PLANT CELL, 2006, 18 (08): : 1803 - 1818
  • [50] Genome-Wide Patterns of Arabidopsis Gene Expression in Nature
    Richards, Christina L.
    Rosas, Ulises
    Banta, Joshua
    Bhambhra, Naeha
    Purugganan, Michael D.
    PLOS GENETICS, 2012, 8 (04): : 482 - 495