Regulation by the RNA-binding protein Unkempt at its effector interface

被引:2
|
作者
Shah, Kriti [1 ,2 ]
He, Shiyang [1 ,2 ]
Turner, David J. [3 ]
Corbo, Joshua [3 ,8 ]
Rebbani, Khadija [3 ]
Dominguez, Daniel [4 ]
Bateman, Joseph M. [5 ]
Cheloufi, Sihem [1 ,2 ,6 ]
Igreja, Catia [7 ]
Valkov, Eugene [3 ]
Murn, Jernej [1 ,2 ]
机构
[1] Univ Calif Riverside, Dept Biochem, 3401 Watkins Dr,Boyce Hall, Riverside, CA 92521 USA
[2] Ctr RNA Biol & Med, 900 Univ Ave, Riverside, CA 92521 USA
[3] NCI, RNA Biol Lab, Ctr Canc Res, Frederick, MD 21702 USA
[4] Univ N Carolina, Dept Pharmacol, Chapel Hill, NC 27599 USA
[5] Kings Coll London, Maurice Wohl Clin Neurosci Inst, 5 Cutcombe Rd, London SE5 9RX, England
[6] Univ Calif Riverside, Stem Cell Ctr, 900 Univ Ave, Riverside, CA 92521 USA
[7] Dept Integrat Evolutionary Biol, Max Planck Ring 9, D-72076 Tubingen, Germany
[8] Harvard Univ, Dept Mol & Cellular Biol, 52 Oxford St, Cambridge, MA 02138 USA
基金
美国国家卫生研究院;
关键词
MESSENGER-RNA; CCR4-NOT COMPLEX; TRANSLATIONAL REPRESSION; GENE; RECOGNITION; PABP; TRANSCRIPTOME; RECRUITMENT; EXPRESSION; PROTEOMICS;
D O I
10.1038/s41467-024-47449-4
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
How RNA-binding proteins (RBPs) convey regulatory instructions to the core effectors of RNA processing is unclear. Here, we document the existence and functions of a multivalent RBP-effector interface. We show that the effector interface of a conserved RBP with an essential role in metazoan development, Unkempt, is mediated by a novel type of 'dual-purpose' peptide motifs that can contact two different surfaces of interacting proteins. Unexpectedly, we find that the multivalent contacts do not merely serve effector recruitment but are required for the accuracy of RNA recognition by Unkempt. Systems analyses reveal that multivalent RBP-effector contacts can repurpose the principal activity of an effector for a different function, as we demonstrate for the reuse of the central eukaryotic mRNA decay factor CCR4-NOT in translational control. Our study establishes the molecular assembly and functional principles of an RBP-effector interface. How RNA-binding proteins (RBPs) regulate gene expression via effectors of RNA processing is unclear. Here, the authors dissect the effector interface of an essential RBP, Unkempt, and investigate its contribution to translational control in cells.
引用
收藏
页数:18
相关论文
共 50 条
  • [41] Posttranscriptional Regulation of VEGF in Diabetic Retina: Role of the RNA-Binding Protein HuR
    Bucolo, C.
    Amadio, M.
    Drago, F.
    Govoni, S.
    Pascale, A.
    INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE, 2010, 51 (13)
  • [42] The regulation of AβPP expression by RNA-binding proteins
    Westmark, Cara J.
    Malter, James S.
    AGEING RESEARCH REVIEWS, 2012, 11 (04) : 450 - 459
  • [43] Mechanism of RNA recognition by a Musashi RNA-binding protein
    Wang, Jinan
    Lan, Lan
    Wu, Xiaoqing
    Xu, Liang
    Miao, Yinglong
    CURRENT RESEARCH IN STRUCTURAL BIOLOGY, 2022, 4 : 10 - 20
  • [44] Regulation of β-cell function by RNA-binding proteins
    Magro, Maria Grazia
    Solimena, Michele
    MOLECULAR METABOLISM, 2013, 2 (04): : 348 - 355
  • [45] Beyond RNA-binding domains: determinants of protein-RNA binding
    Zigdon, Inbal
    Carmi, Miri
    Brodsky, Sagie
    Rosenwaser, Zohar
    Barkai, Naama
    Jonas, Felix
    RNA, 2024, 30 (12) : 1620 - 1633
  • [46] Regulation of RNA editing by RNA-binding proteins in human cells
    Quinones-Valdez, Giovanni
    Tran, Stephen S.
    Jun, Hyun-Ik
    Bahn, Jae Hoon
    Yang, Ei-Wen
    Zhan, Lijun
    Brummer, Anneke
    Wei, Xintao
    Van Nostrand, Eric L.
    Pratt, Gabriel A.
    Yeo, Gene W.
    Graveley, Brenton R.
    Xiao, Xinshu
    COMMUNICATIONS BIOLOGY, 2019, 2 (1)
  • [47] Regulation of RNA editing by RNA-binding proteins in human cells
    Giovanni Quinones-Valdez
    Stephen S. Tran
    Hyun-Ik Jun
    Jae Hoon Bahn
    Ei-Wen Yang
    Lijun Zhan
    Anneke Brümmer
    Xintao Wei
    Eric L. Van Nostrand
    Gabriel A. Pratt
    Gene W. Yeo
    Brenton R. Graveley
    Xinshu Xiao
    Communications Biology, 2
  • [48] Engineered RNA-binding Proteins: Studying and Controlling RNA Regulation
    Sinnott, Riley W.
    Cao, Yang
    Dickinson, Bryan C.
    ISRAEL JOURNAL OF CHEMISTRY, 2024, 64 (3-4)
  • [49] Inherent protein structural flexibility at the RNA-binding interface of L30e
    Chao, JA
    Prasad, GS
    White, SA
    Stout, CD
    Williamson, JR
    JOURNAL OF MOLECULAR BIOLOGY, 2003, 326 (04) : 999 - 1004
  • [50] Polypyrimidine-tract-binding protein: a multifunctional RNA-binding protein
    Sawicka, Kirsty
    Bushell, Martin
    Spriggs, Keith A.
    Willis, Anne E.
    BIOCHEMICAL SOCIETY TRANSACTIONS, 2008, 36 : 641 - 647