Genomic characterization and phylogenetic analysis of the novel Pseudomonas phage PPSC2

被引：0
|
作者：
Xiang Wu
Yongfeng Wu
Ya Tang
Bingcheng Gan
机构：
[1] Sichuan University,College of Architecture and Environment
[2] Sichuan Provincial Transport Department Highway Planning,Soil and Fertilizer institute
[3] Survey,undefined
[4] Design and Research Institute,undefined
[5] Sichuan Academy of Agricultural Sciences,undefined
来源：
Archives of Virology | 2018年 / 163卷
关键词：
D O I：
暂无
中图分类号：
学科分类号：
摘要：
We isolated a Pseudomonas phage infecting Pseudomonas fluorescens SA1 separated from a soil sample collected in Sichuan Province, China. This phage, which we named PPSC2, has a genome that is composed of a 97,330-bp-long linear double-stranded DNA with 47.51% G+C content and 168 putative protein-coding genes. We identified 20 tRNA genes in the genome of PPSC2, and the tRNA GC content ranged from 44.2% to 58.4%. Phylogenetic and BLASTn analysis revealed that the Pseudomonas phage PPSC2 should be considered a new member of the family Myoviridae.
引用
收藏
页码：1977 / 1980
页数：3
相关论文
共 50 条
  • [41] Characterization and genomic study of “phiKMV-Like” phage PAXYB1 infecting Pseudomonas aeruginosa
    Xinyan Yu
    Yue Xu
    Yu Gu
    Yefei Zhu
    Xiaoqiu Liu
    Scientific Reports, 7
  • [42] Genomic characterization and phylogenetic evolution of the SARS-CoV-2
    Zhang, R-H
    Ai, X.
    Liu, Y. G.
    Li, Ch-H
    Zhang, H-L
    ACTA VIROLOGICA, 2020, 64 (04) : 496 - 500
  • [43] Characterization and genomic analysis of a broad-spectrum lytic phage HZ2201 and its antibiofilm efficacy against Pseudomonas aeruginosa
    Fei, Bing
    Li, Dengzhou
    Liu, Xinwei
    You, Xiaojuan
    Guo, Mengyu
    Ren, Yanying
    Liu, Ying
    Wang, Chunxia
    Zhu, Rui
    Li, Yongwei
    VIRUS RESEARCH, 2023, 335
  • [44] Characterization and genome-informatic analysis of a novel lytic mendocina phage vB_PmeS_STP12 suitable for phage therapy pseudomonas or biocontrol
    Usman, Sani Sharif
    Christina, Evangeline
    MOLECULAR BIOLOGY REPORTS, 2024, 51 (01)
  • [45] Genomic characterization and phylogenetic analysis of the first SARS-CoV-2 variants introduced in Lebanon
    Feghali, Rita
    Merhi, Georgi
    Kwasiborski, Aurelia
    Hourdel, Veronique
    Ghosn, Nada
    Tokajian, Sima
    PEERJ, 2021, 9
  • [46] Isolation and Genomic Analysis of the Phage vB_PaeP_fHoPae04 Infecting Pseudomonas aeruginosa
    Patpatia, Sheetal
    Yilmaz, Ozgenur
    Ylanne, Matti
    Kiljunen, Saija
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2021, 10 (22):
  • [47] Characterization and genomic study of EJP2, a novel jumbo phage targeting antimicrobial resistant Escherichia coli
    Jo, Dohyeong
    Kim, Hyeongsoon
    Lee, Yoona
    Kim, Jinshil
    Ryu, Sangryeol
    FRONTIERS IN MICROBIOLOGY, 2023, 14
  • [48] Genomic Analysis of Pseudomonas putida Phage tf with Localized Single-Strand DNA Interruptions
    Glukhov, Anatoly S.
    Krutilina, Antonina I.
    Shlyapnikov, Michael G.
    Severinov, Konstantin
    Lavysh, Daria
    Kochetkov, Vladimir V.
    McGrath, John W.
    de Leeuwe, Colin
    Shaburova, Olga V.
    Krylov, Victor N.
    Akulenko, Natalia V.
    Kulakov, Leonid A.
    PLOS ONE, 2012, 7 (12):
  • [49] The Characterization of a Novel Phage, pPa_SNUABM_DT01, Infecting Pseudomonas aeruginosa
    Kwon, Jun
    Kim, Sang Wha
    Kim, Sang Guen
    Kang, Jeong Woo
    Jung, Won Joon
    Lee, Sung Bin
    Lee, Young Min
    Giri, Sib Sankar
    Chi, Cheng
    Park, Se Chang
    MICROORGANISMS, 2021, 9 (10)
  • [50] Characterization and genomic analysis of a novel Synechococcus phage S-H9-2 belonging to Bristolvirus genus isolated from the Yellow Sea
    Luo, Lin
    Ma, Xiaohong
    Guo, Ruizhe
    Jiang, Tong
    Wang, Tiancong
    Shao, Hongbing
    He, Hui
    Wang, Hualong
    Liang, Yantao
    McMinn, Andrew
    Guo, Cui
    Wang, Min
    VIRUS RESEARCH, 2023, 328
12345