Fast and accurate automated cell boundary determination for fluorescence microscopy

被引:0
|
作者
Stephen Hugo Arce
Pei-Hsun Wu
Yiider Tseng
机构
[1] Department of Chemical Engineering,Institute for Cell Engineering and Regenerative Medicine
[2] University of Florida,Department of Chemical and Biomolecular Engineering
[3] National Cancer Institute-Physical Science in Oncology Center,undefined
[4] The Johns Hopkins University,undefined
来源
关键词
D O I
暂无
中图分类号
学科分类号
摘要
Detailed measurement of cell phenotype information from digital fluorescence images has the potential to greatly advance biomedicine in various disciplines such as patient diagnostics or drug screening. Yet, the complexity of cell conformations presents a major barrier preventing effective determination of cell boundaries and introduces measurement error that propagates throughout subsequent assessment of cellular parameters and statistical analysis. State-of-the-art image segmentation techniques that require user-interaction, prolonged computation time and specialized training cannot adequately provide the support for high content platforms, which often sacrifice resolution to foster the speedy collection of massive amounts of cellular data. This work introduces a strategy that allows us to rapidly obtain accurate cell boundaries from digital fluorescent images in an automated format. Hence, this new method has broad applicability to promote biotechnology.
引用
收藏
相关论文
共 50 条
  • [1] Fast and accurate automated cell boundary determination for fluorescence microscopy
    Arce, Stephen Hugo
    Wu, Pei-Hsun
    Tseng, Yiider
    SCIENTIFIC REPORTS, 2013, 3
  • [2] Fast and accurate sCMOS noise correction for fluorescence microscopy
    Mandracchia, Biagio
    Hua, Xuanwen
    Guo, Changliang
    Son, Jeonghwan
    Urner, Tara
    Jia, Shu
    NATURE COMMUNICATIONS, 2020, 11 (01)
  • [3] Fast and accurate sCMOS noise correction for fluorescence microscopy
    Biagio Mandracchia
    Xuanwen Hua
    Changliang Guo
    Jeonghwan Son
    Tara Urner
    Shu Jia
    Nature Communications, 11
  • [4] Fast, accurate reconstruction of cell Lineages from Large-scale fluorescence microscopy data
    Amat, Fernando
    Lemon, William
    Mossing, Daniel P.
    McDole, Katie
    Wan, Yinan
    Branson, Kristin
    Myers, Eugene W.
    Keller, Philipp J.
    NATURE METHODS, 2014, 11 (09) : 951 - 958
  • [5] Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data
    Amat F.
    Lemon W.
    Mossing D.P.
    McDole K.
    Wan Y.
    Branson K.
    Myers E.W.
    Keller P.J.
    Nature Methods, 2014, 11 (9) : 951 - 958
  • [6] Automated Quantitative Live Cell Fluorescence Microscopy
    Fero, Michael
    Pogliano, Kit
    COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY, 2010, 2 (08): : a000455
  • [7] Fast and accurate determination of the spatial boundary of IFS attractors
    He, YX
    He, YL
    Li, H
    COMPUTERS & GRAPHICS-UK, 1999, 23 (04): : 547 - 553
  • [8] Single cell analysis by automated digital fluorescence microscopy
    Méhes, G
    CYTOMETRY PART A, 2004, 60A (02): : 197 - 198
  • [9] Location proteomics; Automated determination of subcellular location patterns by fluorescence microscopy
    Murphy, R. F.
    MOLECULAR & CELLULAR PROTEOMICS, 2005, 4 (08) : S94 - S94
  • [10] Automated cell cycle analysis with fluorescence microscopy and image analysis
    Bocker, W
    Gantenberg, HW
    Muller, WU
    Streffer, C
    PHYSICS IN MEDICINE AND BIOLOGY, 1996, 41 (03): : 523 - 537