Using 16S rRNA gene as marker to detect unknown bacteria in microbial communities

被引:0
|
作者
Quang Tran
Diem-Trang Pham
Vinhthuy Phan
机构
[1] University of Memphis,Department of Computer Science
来源
关键词
Metagenomics; Bacteria detection; NGS analysis;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] Using 16S rRNA gene as marker to detect unknown bacteria in microbial communities
    Quang Tran
    Diem-Trang Pham
    Phan, Vinhthuy
    [J]. BMC BIOINFORMATICS, 2017, 18
  • [2] Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
    Morgan G I Langille
    Jesse Zaneveld
    J Gregory Caporaso
    Daniel McDonald
    Dan Knights
    Joshua A Reyes
    Jose C Clemente
    Deron E Burkepile
    Rebecca L Vega Thurber
    Rob Knight
    Robert G Beiko
    Curtis Huttenhower
    [J]. Nature Biotechnology, 2013, 31 : 814 - 821
  • [3] Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
    Langille, Morgan G. I.
    Zaneveld, Jesse
    Caporaso, J. Gregory
    McDonald, Daniel
    Knights, Dan
    Reyes, Joshua A.
    Clemente, Jose C.
    Burkepile, Deron E.
    Thurber, Rebecca L. Vega
    Knight, Rob
    Beiko, Robert G.
    Huttenhower, Curtis
    [J]. NATURE BIOTECHNOLOGY, 2013, 31 (09) : 814 - +
  • [4] The 16S rRNA gene in the study of marine microbial communities
    Valenzuela-Gonzalez, Fabiola
    Casillas-Hernandez, Ramon
    Villalpando, Enrique
    Vargas-Albores, Francisco
    [J]. CIENCIAS MARINAS, 2015, 41 (04) : 297 - 313
  • [5] 16S rRNA Gene Survey of Microbial Communities in Winogradsky Columns
    Rundell, Ethan A.
    Banta, Lois M.
    Ward, Doyle V.
    Watts, Corey D.
    Birren, Bruce
    Esteban, David J.
    [J]. PLOS ONE, 2014, 9 (08):
  • [6] Phylogenetic Clustering of Soil Microbial Communities by 16S rRNA but Not 16S rRNA Genes
    DeAngelis, Kristen M.
    Firestone, Mary K.
    [J]. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2012, 78 (07) : 2459 - 2461
  • [7] Characterization of the Fecal Microbial Communities of Duroc Pigs Using 16S rRNA Gene Pyrosequencing
    Pajarillo, Edward Alain B.
    Chae, Jong Pyo
    Balolong, Marilen P.
    Kim, Hyeun Bum
    Seo, Kang-Seok
    Kang, Dae-Kyung
    [J]. ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES, 2015, 28 (04): : 584 - 591
  • [8] Use of multivariate statistics for 16S rRNA gene analysis of microbial communities
    Rudi, K.
    Zimonja, M.
    Trosvik, P.
    Naes, T.
    [J]. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY, 2007, 120 (1-2) : 95 - 99
  • [9] Analysis of microbial communities of ocular prostheses and anophthalmic sockets using 16S rRNA gene sequencing
    Makrakis, L. R.
    Oliveira, V. C.
    Santos, E. S.
    Nascimento, C.
    Watanabe, E.
    Ribeiro, A. B.
    Silva-Lovato, C. H.
    [J]. BIOFOULING, 2023, 39 (05) : 555 - 564
  • [10] An integrated strategy for functional analysis of microbial communities based on gene ontology and 16S rRNA gene
    Deng, Su-Ping
    Huang, De-Shuang
    [J]. INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS, 2015, 13 (01) : 63 - 74