The 16S rRNA gene in the study of marine microbial communities

被引:8
|
作者
Valenzuela-Gonzalez, Fabiola [1 ]
Casillas-Hernandez, Ramon [1 ]
Villalpando, Enrique [1 ]
Vargas-Albores, Francisco [1 ]
机构
[1] Ctr Invest Alimentac & Desarrollo, POB 1735, Hermosillo 83000, Sonora, Mexico
关键词
metagenomics; marine microbial communities; 16S rRNA databases; LIVING TREE PROJECT; BACTERIAL COMMUNITIES; TAXONOMIC ASSIGNMENT; SEQUENCE DATABASE; IDENTIFICATION; DIVERSITY; GENOMICS; CLASSIFICATION; ABUNDANCE; SEDIMENTS;
D O I
10.7773/cm.v41i4.2492
中图分类号
Q17 [水生生物学];
学科分类号
071004 ;
摘要
New sequencing technologies and analytical capabilities have stimulated the study of microbial communities from specific environments, enabling researchers to understand the complexity of those systems. The 16S rRNA gene has proved very useful in describing the diversity and characterization of marine microbial communities, particularly of uncultivated organisms. The development of new sequencing techniques has contributed to the exponential increase in the number of reported 16S rRNA sequences as barcodes for microorganisms, forcing a review of concepts and methods for the taxonomic classification of these organisms. Manipulation and analysis of large amounts of genetic information have prompted the development of specific databases, specialized algorithms, and computational tools to compare thousands of such sequences and make a taxonomic assignment. Complete 16S rRNA sequences are thus needed for accurate and reproducible taxonomy assignment in the study of marine bacterial communities.
引用
收藏
页码:297 / 313
页数:17
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