An improved de novo genome assembly of the common marmoset genome yields improved contiguity and increased mapping rates of sequence data

被引：0
|
作者：
Vasanthan Jayakumar
Hiromi Ishii
Misato Seki
Wakako Kumita
Takashi Inoue
Sumitaka Hase
Kengo Sato
Hideyuki Okano
Erika Sasaki
Yasubumi Sakakibara
机构：
[1] Keio University,Department of Biosciences and Informatics
[2] Central Institute for Experimental Animals,Department of Marmoset Biology and Medicine
[3] Keio University School of Medicine,Department of Physiology
[4] RIKEN Center for Brain Science,Laboratory for Marmoset Neural Architecture
来源：
BMC Genomics | / 21卷
关键词：
Common marmoset; De novo assembly; Non-human primate genomics; Chromosome-scale scaffolds;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [31] The sequence and de novo assembly of the genome of the Indian oil sardine, Sardinella longiceps
    Sandhya Sukumaran
    Wilson Sebastian
    A. Gopalakrishnan
    Oommen K. Mathew
    V. G. Vysakh
    Prathibha Rohit
    J. K. Jena
    Scientific Data, 10
  • [32] The sequence and de novo assembly of the genome of the Indian oil sardine, Sardinella longiceps
    Sukumaran, Sandhya
    Sebastian, Wilson
    Gopalakrishnan, A.
    Mathew, Oommen K.
    Vysakh, V. G.
    Rohit, Prathibha
    Jena, J. K.
    SCIENTIFIC DATA, 2023, 10 (01)
  • [33] Employing whole genome mapping for optimal de novo assembly of bacterial genomes
    Xavier B.B.
    Sabirova J.
    Pieter M.
    Hernalsteens J.-P.
    De Greve H.
    Goossens H.
    Malhotra-Kumar S.
    BMC Research Notes, 7 (1)
  • [34] Improved reference genome for the domestic horse increases assembly contiguity and composition (vol 1, 197, 2018)
    Kalbfleisch, Theodore S.
    Rice, Edward S.
    DePriest, Michael S., Jr.
    Walenz, Brian P.
    Hestand, Matthew S.
    Vermeesch, Joris R.
    O'Connell, Brendan L.
    Fiddes, Ian T.
    Vershinina, Alisa O.
    Saremi, Nedda F.
    Petersen, Jessica L.
    Finno, Carrie J.
    Bellone, Rebecca R.
    Mccue, Molly E.
    Brooks, Samantha A.
    Bailey, Ernest
    Orlando, Ludovic
    Green, Richard E.
    Miller, Donald C.
    Antczak, Douglas F.
    MacLeod, James N.
    COMMUNICATIONS BIOLOGY, 2019, 2 (1)
  • [35] ntLink: A Toolkit for De Novo Genome Assembly Scaffolding and Mapping Using Long Reads
    Coombe, Lauren
    Warren, Rene L.
    Wong, Johnathan
    Nikolic, Vladimir
    Birol, Inanc
    CURRENT PROTOCOLS, 2023, 3 (04):
  • [36] Mapping and De Novo Assembly of Long Barcoded Molecules of DNA from a Cancer Genome
    Reifenberger, Jeff G.
    Dzakula, Zeljko
    Dergachev, Vladimir
    Anantharaman, Thomas
    Hastie, Alex
    Chan, Saki
    Cao, Han
    BIOPHYSICAL JOURNAL, 2015, 108 (02) : 149A - 149A
  • [37] NOVOPlasty: de novo assembly of organelle genomes from whole genome data
    Dierckxsens, Nicolas
    Mardulyn, Patrick
    Smits, Guillaume
    NUCLEIC ACIDS RESEARCH, 2017, 45 (04)
  • [38] ELOPER: elongation of paired-end reads as a pre-processing tool for improved de novo genome assembly
    Silver, David H.
    Ben-Elazar, Shay
    Bogoslavsky, Alexei
    Yanai, Itai
    BIOINFORMATICS, 2013, 29 (11) : 1455 - 1457
  • [39] Improved sequence mapping using a complete reference genome and lift-over
    Nae-Chyun Chen
    Luis F. Paulin
    Fritz J. Sedlazeck
    Sergey Koren
    Adam M. Phillippy
    Ben Langmead
    Nature Methods, 2024, 21 (1) : 41 - 49
  • [40] Improved sequence mapping using a complete reference genome and lift-over
    Chen, Nae-Chyun
    Paulin, Luis F.
    Sedlazeck, Fritz J.
    Koren, Sergey
    Phillippy, Adam M.
    Langmead, Ben
    NATURE METHODS, 2024, 21 (01) : 41 - +
12345