A comparison of automatic cell identification methods for single-cell RNA sequencing data

被引:0
|
作者
Tamim Abdelaal
Lieke Michielsen
Davy Cats
Dylan Hoogduin
Hailiang Mei
Marcel J. T. Reinders
Ahmed Mahfouz
机构
[1] Leiden University Medical Center,Leiden Computational Biology Center
[2] Delft University of Technology,Delft Bioinformatics Laboratory
[3] Leiden University Medical Center,Sequencing Analysis Support Core, Department of Biomedical Data Sciences
来源
关键词
scRNA-seq; Benchmark; Classification; Cell identity;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [21] scDA: Single cell discriminant analysis for single-cell RNA sequencing data
    Shi, Qianqian
    Li, Xinxing
    Peng, Qirui
    Zhang, Chuanchao
    Chen, Luonan
    Computational and Structural Biotechnology Journal, 2021, 19 : 3234 - 3244
  • [22] scDA: Single cell discriminant analysis for single-cell RNA sequencing data
    Shi, Qianqian
    Li, Xinxing
    Peng, Qirui
    Zhang, Chuanchao
    Chen, Luonan
    COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2021, 19 : 3234 - 3244
  • [23] Complex Analysis of Single-Cell RNA Sequencing Data
    Khozyainova, Anna A. A.
    Valyaeva, Anna A. A.
    Arbatsky, Mikhail S. S.
    Isaev, Sergey V. V.
    Iamshchikov, Pavel S. S.
    Volchkov, Egor V. V.
    Sabirov, Marat S. S.
    Zainullina, Viktoria R. R.
    Chechekhin, Vadim I. I.
    Vorobev, Rostislav S. S.
    Menyailo, Maxim E. E.
    Tyurin-Kuzmin, Pyotr A. A.
    Denisov, Evgeny V. V.
    BIOCHEMISTRY-MOSCOW, 2023, 88 (02) : 231 - 252
  • [24] Splatter: simulation of single-cell RNA sequencing data
    Zappia, Luke
    Phipson, Belinda
    Oshlack, Alicia
    GENOME BIOLOGY, 2017, 18
  • [25] Complex Analysis of Single-Cell RNA Sequencing Data
    Anna A. Khozyainova
    Anna A. Valyaeva
    Mikhail S. Arbatsky
    Sergey V. Isaev
    Pavel S. Iamshchikov
    Egor V. Volchkov
    Marat S. Sabirov
    Viktoria R. Zainullina
    Vadim I. Chechekhin
    Rostislav S. Vorobev
    Maxim E. Menyailo
    Pyotr A. Tyurin-Kuzmin
    Evgeny V. Denisov
    Biochemistry (Moscow), 2023, 88 : 231 - 252
  • [26] scRAA: the development of a robust and automatic annotation procedure for single-cell RNA sequencing data
    Yan, Dongyan
    Sun, Zhe
    Fang, Jiyuan
    Cao, Shanshan
    Wang, Wenjie
    Chang, Xinyue
    Badirli, Sarkhan
    Fu, Haoda
    Liu, Yushi
    JOURNAL OF BIOPHARMACEUTICAL STATISTICS, 2023,
  • [27] Splatter: simulation of single-cell RNA sequencing data
    Luke Zappia
    Belinda Phipson
    Alicia Oshlack
    Genome Biology, 18
  • [28] Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information
    Liu, Zhaoyang
    Sun, Dongqing
    Wang, Chenfei
    GENOME BIOLOGY, 2022, 23 (01)
  • [29] Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information
    Zhaoyang Liu
    Dongqing Sun
    Chenfei Wang
    Genome Biology, 23
  • [30] Editorial: Methods for Single-Cell and Microbiome Sequencing Data
    Mallick, Himel
    An, Lingling
    Chen, Mengjie
    Wang, Pei
    Zhao, Ni
    FRONTIERS IN GENETICS, 2022, 13