Genome comparison without alignment using shortest unique substrings

被引：0
|
作者：
Bernhard Haubold
Nora Pierstorff
Friedrich Möller
Thomas Wiehe
机构：
[1] University of Applied Sciences,Department of Biotechnology & Bioinformatics
[2] Universität zu Köln,Institute of Genetics
[3] Berlin Center for Genome Based Bioinformatics and Freie Universität,undefined
来源：
BMC Bioinformatics | / 6卷
关键词：
Upstream Region; Suffix Tree; Mycoplasma Genitalium; Unique Substrings; Combine Length;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [21] kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome
    Gardner, Shea N.
    Slezak, Tom
    Hall, Barry G.
    BIOINFORMATICS, 2015, 31 (17) : 2877 - 2878
  • [22] Improving pan-genome annotation using whole genome multiple alignment
    Samuel V Angiuoli
    Julie C Dunning Hotopp
    Steven L Salzberg
    Hervé Tettelin
    BMC Bioinformatics, 12
  • [23] Improving pan-genome annotation using whole genome multiple alignment
    Angiuoli, Samuel V.
    Hotopp, Julie C. Dunning
    Salzberg, Steven L.
    Tettelin, Herve
    BMC BIOINFORMATICS, 2011, 12
  • [24] Alignment free comparison: Similarity distribution between the DNA primary sequences based on the shortest absent word
    Yang, Lianping
    Zhang, Xiangde
    Zhu, Hegui
    JOURNAL OF THEORETICAL BIOLOGY, 2012, 295 : 125 - 131
  • [25] Alignment-free comparison of genome sequences by a new numerical characterization
    Huang, Guohua
    Zhou, Houqing
    Li, Yongfan
    Xu, Lixin
    JOURNAL OF THEORETICAL BIOLOGY, 2011, 281 (01) : 107 - 112
  • [26] Comparison of alignment software for genome-wide bisulphite sequence data
    Chatterjee, Aniruddha
    Stockwell, Peter A.
    Rodger, Euan J.
    Morison, Ian M.
    NUCLEIC ACIDS RESEARCH, 2012, 40 (10)
  • [27] Visualization of consensus genome structure without using a reference genome
    Tada, Ipputa
    Tanizawa, Yasuhiro
    Arita, Masanori
    BMC GENOMICS, 2017, 18
  • [28] Visualization of consensus genome structure without using a reference genome
    Ipputa Tada
    Yasuhiro Tanizawa
    Masanori Arita
    BMC Genomics, 18
  • [29] Comparison of plastid genome using stereo genome viewer
    Sasaki, N
    Sato, N
    PLANT AND CELL PHYSIOLOGY, 2002, 43 : S123 - S123
  • [30] Shortest path auction algorithm without contractions using virtual source concept
    Cerulli, R
    Festa, P
    Raiconi, G
    COMPUTATIONAL OPTIMIZATION AND APPLICATIONS, 2003, 26 (02) : 191 - 208
12345