Protein crystal screening and characterization for serial femtosecond nanocrystallography

被引:0
|
作者
Connie Darmanin
Jamie Strachan
Christopher G. Adda
Thomas Ve
Bostjan Kobe
Brian Abbey
机构
[1] ARC Centre of Advanced Molecular Imaging,Department of Chemistry and Physics
[2] La Trobe Institute for Molecular Science,Department of Biochemistry and Genetics
[3] La Trobe University,School of Chemistry and Molecular Biosciences and Institute for Molecular Bioscience (Division of Chemistry and Structural Biology) and Australian Infectious Diseases Research Centre
[4] La Trobe Institute for Molecular Science,undefined
[5] La Trobe University,undefined
[6] University of Queensland,undefined
[7] Institute for Glycomics,undefined
[8] Griffith University,undefined
[9] Gold Coast Campus,undefined
[10] Melbourne Centre for Nanofabrication,undefined
来源
关键词
D O I
暂无
中图分类号
学科分类号
摘要
The recent development of X-ray free electron lasers (XFELs) has spurred the development of serial femtosecond nanocrystallography (SFX) which, for the first time, is enabling structure retrieval from sub-micron protein crystals. Although there are already a growing number of structures published using SFX, the technology is still very new and presents a number of unique challenges as well as opportunities for structural biologists. One of the biggest barriers to the success of SFX experiments is the preparation and selection of suitable protein crystal samples. Here we outline a protocol for preparing and screening for suitable XFEL targets.
引用
收藏
相关论文
共 50 条
  • [21] Observation of shock-induced protein crystal damage during megahertz serial femtosecond crystallography
    Gruenbein, Marie L.
    Foucar, Lutz
    Gorel, Alexander
    Hilpert, Mario
    Kloos, Marco
    Nass, Karol
    Kovacs, Gabriela Nass
    Roome, Christopher M.
    Shoeman, Robert L.
    Stricker, Miriam
    Carbajo, Sergio
    Colocho, William
    Gilevich, Sasha
    Hunter, Mark
    Lewandowski, Jim
    Lutman, Alberto
    Koglin, Jason E.
    Lane, Thomas J.
    van Driel, Tim
    Sheppard, John
    Vetter, Sharon L.
    Turner, James L.
    Doak, R. Bruce
    Barends, Thomas R. M.
    Boutet, Sebastien
    Aquila, Andrew L.
    Decker, Franz-Josef
    Schlichting, Ilme
    Stan, Claudiu A.
    PHYSICAL REVIEW RESEARCH, 2021, 3 (01):
  • [22] Oxygen additions in serial femtosecond crystallographic protein structures
    Wang, Jimin
    PROTEIN SCIENCE, 2016, 25 (10) : 1797 - 1802
  • [23] Lipidic phase membrane protein serial femtosecond crystallography
    Johansson, Linda C.
    Arnlund, David
    White, Thomas A.
    Katona, Gergely
    DePonte, Daniel P.
    Weierstall, Uwe
    Doak, R. Bruce
    Shoeman, Robert L.
    Lomb, Lukas
    Malmerberg, Erik
    Davidsson, Jan
    Nass, Karol
    Liang, Mengning
    Andreasson, Jakob
    Aquila, Andrew
    Bajt, Sasa
    Barthelmess, Miriam
    Barty, Anton
    Bogan, Michael J.
    Bostedt, Christoph
    Bozek, John D.
    Caleman, Carl
    Coffee, Ryan
    Coppola, Nicola
    Ekeberg, Tomas
    Epp, Sascha W.
    Erk, Benjamin
    Fleckenstein, Holger
    Foucar, Lutz
    Graafsma, Heinz
    Gumprecht, Lars
    Hajdu, Janos
    Hampton, Christina Y.
    Hartmann, Robert
    Hartmann, Andreas
    Hauser, Guenter
    Hirsemann, Helmut
    Holl, Peter
    Hunter, Mark S.
    Kassemeyer, Stephan
    Kimmel, Nils
    Kirian, Richard A.
    Maia, Filipe R. N. C.
    Marchesini, Stefano
    Martin, Andrew V.
    Reich, Christian
    Rolles, Daniel
    Rudek, Benedikt
    Rudenko, Artem
    Schlichting, Ilme
    NATURE METHODS, 2012, 9 (03) : 263 - 265
  • [24] Lipidic phase membrane protein serial femtosecond crystallography
    Linda C Johansson
    David Arnlund
    Thomas A White
    Gergely Katona
    Daniel P DePonte
    Uwe Weierstall
    R Bruce Doak
    Robert L Shoeman
    Lukas Lomb
    Erik Malmerberg
    Jan Davidsson
    Karol Nass
    Mengning Liang
    Jakob Andreasson
    Andrew Aquila
    Saša Bajt
    Miriam Barthelmess
    Anton Barty
    Michael J Bogan
    Christoph Bostedt
    John D Bozek
    Carl Caleman
    Ryan Coffee
    Nicola Coppola
    Tomas Ekeberg
    Sascha W Epp
    Benjamin Erk
    Holger Fleckenstein
    Lutz Foucar
    Heinz Graafsma
    Lars Gumprecht
    Janos Hajdu
    Christina Y Hampton
    Robert Hartmann
    Andreas Hartmann
    Günter Hauser
    Helmut Hirsemann
    Peter Holl
    Mark S Hunter
    Stephan Kassemeyer
    Nils Kimmel
    Richard A Kirian
    Filipe R N C Maia
    Stefano Marchesini
    Andrew V Martin
    Christian Reich
    Daniel Rolles
    Benedikt Rudek
    Artem Rudenko
    Ilme Schlichting
    Nature Methods, 2012, 9 (3) : 263 - 265
  • [25] A novel inert crystal delivery medium for serial femtosecond crystallography
    Conrad, Chelsie E.
    Basu, Shibom
    James, Daniel
    Wang, Dingjie
    Schaffer, Alexander
    Roy-Chowdhury, Shatabdi
    Zatsepin, Nadia A.
    Aquila, Andrew
    Coe, Jesse
    Gati, Cornelius
    Hunter, Mark S.
    Koglin, Jason E.
    Kupitz, Christopher
    Nelson, Garrett
    Subramanian, Ganesh
    White, Thomas A.
    Zhao, Yun
    Zook, James
    Boutet, Sebastien
    Cherezov, Vadim
    Spence, John C. H.
    Fromme, Raimund
    Weierstall, Uwe
    Fromme, Petra
    IUCRJ, 2015, 2 : 421 - 430
  • [26] Direct phasing in femtosecond nanocrystallography. II. Phase retrieval
    Chen, Joe P. J.
    Spence, John C. H.
    Millane, Rick P.
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2014, 70 : 154 - 161
  • [27] Crystal structure of a bacterial photoactivated adenylate cyclase determined by serial femtosecond and serial synchrotron crystallography
    Kapetanaki, Sofia M.
    Coquelle, Nicolas
    von Stetten, David
    Byrdin, Martin
    Rios-Santacruz, Ronald
    Bean, Richard
    Bielecki, Johan
    Boudjelida, Mohamed
    Fekete, Zsuzsana
    Grime, Geoffrey W.
    Han, Huijong
    Hatton, Caitlin
    Kantamneni, Sravya
    Kharitonov, Konstantin
    Kim, Chan
    Kloos, Marco
    Koua, Faisal H. M.
    Martinez, Inaki de Diego
    Melo, Diogo
    Rane, Lukas
    Round, Adam
    Round, Ekaterina
    Sarma, Abhisakh
    Schubert, Robin
    Schulz, Joachim
    Sikorski, Marcin
    Vakili, Mohammad
    Valerio, Joana
    Vitas, Jovana
    de Wijn, Raphael
    Wrona, Agnieszka
    Zala, Ninon
    Pearson, Arwen
    Doerner, Katerina
    Schiro, Giorgio
    Garman, Elspeth F.
    Lukacs, Andras
    Weik, Martin
    IUCRJ, 2024, 11 : 991 - 1006
  • [28] Direct phasing in femtosecond nanocrystallography. I. Diffraction characteristics
    Chen, Joe P. J.
    Spence, John C. H.
    Millane, Rick P.
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2014, 70 : 143 - 153
  • [29] Femtosecond nanocrystallography of membrane proteins opens a new Era for Structural Biology
    Fromme, Petra
    Chapman, Henry
    Kupitz, Christopher
    Hunter, Mark S.
    Kirian, Richard. A.
    Barty, Anton
    White, Thomas A.
    Aquilla, Andrew
    Stellato, Francesco
    Beyerlein, Kenneth
    DePonte, Daniel P.
    Frank, Matthias
    Schlichting, Ilme
    Shoeman, Robert
    Lomb, L.
    Steinbrenner, Jan
    Nass, K.
    Boutet, Sebastien
    Bogan, Michael J.
    Williams, Garth
    Zatsepin, Nadia
    Basu, Shibom
    Wang, Dingjie
    James, Daniel
    Fromme, Raimund
    Grotjohann, Ingo
    Bottin, Herve
    Cherezov, Vadim
    Stevens, Ray
    Cobb, Danielle
    Cramer, W.
    Stroud, R.
    Doak, R. Bruce
    Weierstall, Uwe
    Schmidt, Kevin
    Spence, John C. H.
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2012, 68 : S28 - S28
  • [30] Serial Femtosecond Crystallography of G Protein-Coupled Receptors
    Stauch, Benjamin
    Cherezov, Vadim
    ANNUAL REVIEW OF BIOPHYSICS, VOL 47, 2018, 47 : 377 - 397