Aligning coding sequences with frameshift extension penalties

被引：0
|
作者：
Safa Jammali
Esaie Kuitche
Ayoub Rachati
François Bélanger
Michelle Scott
Aïda Ouangraoua
机构：
[1] Université de Sherbrooke,Département d’informatique, Faculté des Sciences
[2] Université de Sherbrooke,Département de biochimie, Faculté de médecine et des sciences de la santé
来源：
Algorithms for Molecular Biology | / 12卷
关键词：
Coding DNA sequences pairwise alignment; Frameshifts; Dynamic programming;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [21] A simple method for aligning many protein sequences
    Bladon, P
    JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 2001, 41 (02): : 278 - 280
  • [22] Aligning DNA sequences to minimize the change in protein
    Hua, YF
    Jiang, T
    Wu, B
    JOURNAL OF COMBINATORIAL OPTIMIZATION, 1999, 3 (2-3) : 227 - 245
  • [23] Aligning Two Genomic Sequences That Contain Duplications
    Hou, Minmei
    Riemer, Cathy
    Berman, Piotr
    Hardison, Ross C.
    Miller, Webb
    COMPARATIVE GENOMICS, PROCEEDINGS, 2009, 5817 : 98 - +
  • [24] Aligning DNA Sequences to Minimize the Change in Protein
    Yufang Hua
    Tao Jiang
    Bin Wu
    Journal of Combinatorial Optimization, 1999, 3 : 227 - 245
  • [25] Alignments of DNA and protein sequences containing frameshift errors
    Guan, XJ
    Uberbacher, EC
    COMPUTER APPLICATIONS IN THE BIOSCIENCES, 1996, 12 (01): : 31 - 40
  • [26] CARCINOGEN-INDUCED FRAMESHIFT MUTAGENESIS IN REPETITIVE SEQUENCES
    LAMBERT, IB
    NAPOLITANO, RL
    FUCHS, RPP
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1992, 89 (04) : 1310 - 1314
  • [27] ON THE MINIMAL EXTENSION OF SEQUENCES
    DUDEK, J
    ALGEBRA UNIVERSALIS, 1986, 23 (03) : 308 - 312
  • [28] The coding of movement sequences
    Kovacs, AJ
    Shea, CH
    JOURNAL OF SPORT & EXERCISE PSYCHOLOGY, 2006, 28 : S104 - S105
  • [29] Aligning Discovered Patterns from Protein Family Sequences
    Lee, En-Shiun Annie
    Zhuang, Dennis
    Wong, Andrew K. C.
    PATTERN RECOGNITION IN BIOINFORMATICS, 2012, 7632 : 243 - 254
  • [30] Comparative assessment of methods for aligning multiple genome sequences
    Xiaoyu Chen
    Martin Tompa
    Nature Biotechnology, 2010, 28 : 567 - 572
12345