Deep sequencing of small RNA facilitates tissue and sex associated microRNA discovery in zebrafish

被引:0
|
作者
Candida Vaz
Choon Wei Wee
Gek Ping Serene Lee
Philip W. Ingham
Vivek Tanavde
Sinnakaruppan Mathavan
机构
[1] Lee Kong Chian School of Medicine,Genome Institute of Singapore
[2] Nanyang Technological University,Bioinformatics Institute
[3] Agency for Science Technology and Research,Institute of Medical Biology
[4] Agency for Science Technology and Research,Institute of Molecular and Cell Biology
[5] Molecular Genomics (P) Ltd,undefined
[6] Agency for Science Technology and Research,undefined
[7] Agency for Science Technology and Research,undefined
来源
BMC Genomics | / 16卷
关键词
Zebrafish; Tissue associated miRNA; Sex associated miRNA; Novel miRNA prediction;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [21] Characterization of microRNA expression profiles by deep sequencing of small RNA libraries in leukemia patients from Naxi ethnic
    Shen, Zhenglei
    Gu, Xuezhong
    Mao, Wenwen
    Cao, Honghua
    Zhang, Rui
    Zhou, Yeying
    Liu, Kunmei
    Wang, Lilan
    Zhang, Zhe
    Yin, Liefen
    TRANSLATIONAL CANCER RESEARCH, 2019, 8 (01) : 160 - +
  • [22] Screening for differentially-expressed microRNA biomarkers in Saudi colorectal cancer patients by small RNA deep sequencing
    Al-Sheikh, Yazeed A.
    Ghneim, Hazem K.
    Alharbi, Khalid K.
    Aboul-Soud, Mourad A. M.
    INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE, 2019, 44 (06) : 2027 - 2036
  • [23] Construction of small RNA cDNA libraries for deep sequencing
    Lu, Cheng
    Meyers, Blake C.
    Green, Pamela J.
    METHODS, 2007, 43 (02) : 110 - 117
  • [24] Small RNA sequencing of colorectal cancer to reveal differences in microRNA expression between normal and tumor tissue.
    Mjelle, Robin
    Sjursen, Wenche
    Thommesen, Liv
    Hofsli, Eva
    JOURNAL OF CLINICAL ONCOLOGY, 2016, 34 (04)
  • [25] Deep Sequencing of Human Renal Allografts and Discovery of MicroRNA Signatures of Allograft Fibrosis
    Muthukumar, T.
    Ben-Dov, I. Z.
    Ding, R.
    Campagne, F.
    Tuschl, T.
    Suthanthiran, M.
    TRANSPLANTATION, 2012, 94 (10) : 494 - 494
  • [26] A mammalian microRNA expression atlas based on small RNA library sequencing
    Landgraf, Pablo
    Rusu, Mirabela
    Sheridan, Robert
    Sewer, Alain
    Iovino, Nicola
    Aravin, Alexei
    Pfeffer, Sebastien
    Rice, Amanda
    Kamphorst, Alice O.
    Landthaler, Markus
    Lin, Carolina
    Socci, Nicholas D.
    Hermida, Leandro
    Fulci, Valerio
    Chiaretti, Sabina
    Foa, Robin
    Schliwka, Julia
    Fuchs, Uta
    Novosel, Astrid
    Mueller, Roman-Ulrich
    Schermer, Bernhard
    Bissels, Ute
    Inman, Jason
    Phan, Quang
    Chien, Minchen
    Weir, David B.
    Choksi, Ruchi
    De Vita, Gabriella
    Frezzetti, Daniela
    Trompeter, Hans-Ingo
    Hornung, Veit
    Teng, Grace
    Hartmann, Gunther
    Palkovits, Miklos
    Di Lauro, Robert
    Wernet, Peter
    Macino, Giuseppe
    Rogler, Charles E.
    Nagle, James W.
    Ju, Jingyue
    Papavasiliou, F. Nina
    Benzing, Thomas
    Lichter, Peter
    Tam, Wayne
    Brownstein, Michael J.
    Bosio, Andreas
    Borkhardt, Arndt
    Russo, James J.
    Sander, Chris
    Zavolan, Mihaela
    CELL, 2007, 129 (07) : 1401 - 1414
  • [27] miRVine: a microRNA expression atlas of grapevine based on small RNA sequencing
    Kullan, Jayakumar Belli
    Pinto, Daniela Lopes Paim
    Bertolini, Edoardo
    Fasoli, Marianna
    Zenoni, Sara
    Tornielli, Giovanni Battista
    Pezzotti, Mario
    Meyers, Blake C.
    Farina, Lorenzo
    Pe, Mario Enrico
    Mica, Erica
    BMC GENOMICS, 2015, 16
  • [28] miRVine: a microRNA expression atlas of grapevine based on small RNA sequencing
    Jayakumar Belli Kullan
    Daniela Lopes Paim Pinto
    Edoardo Bertolini
    Marianna Fasoli
    Sara Zenoni
    Giovanni Battista Tornielli
    Mario Pezzotti
    Blake C. Meyers
    Lorenzo Farina
    Mario Enrico Pè
    Erica Mica
    BMC Genomics, 16
  • [29] Identification and characterization of a maize-associated mastrevirus in China by deep sequencing small RNA populations
    Sha Chen
    Qingqing Huang
    Liqi Wu
    Yajuan Qian
    Virology Journal, 12
  • [30] Identification of miRNAs associated with sexual maturity in chicken ovary by Illumina small RNA deep sequencing
    Kang, Li
    Cui, Xinxing
    Zhang, Yujie
    Yang, Chunhong
    Jiang, Yunliang
    BMC GENOMICS, 2013, 14