Whole-Exome Sequencing Reveals Novel Genetic Variation for Dilated Cardiomyopathy in Pediatric Chinese Patients

被引:0
|
作者
Genyin Dai
Zhening Pu
Xueying Cheng
Jie Yin
Jun Chen
Ting Xu
Han Zhang
Zewei Li
Xuan Chen
Jinlong Chen
Yuming Qin
Shiwei Yang
机构
[1] Children’s Hospital of Nanjing Medical University,Department of Cardiology
[2] Wuxi People’s Hospital of Nanjing Medical University,Center of Clinical Research
[3] Children’s Hospital of Nanjing Medical University,Department of Echocardiography
来源
Pediatric Cardiology | 2019年 / 40卷
关键词
Pediatric dilated cardiomyopathy; Clinical genetics; Whole-exome sequencing; mutations; Compound mutations;
D O I
暂无
中图分类号
学科分类号
摘要
Dilated cardiomyopathy (DCM) is characterized by left or bilateral ventricular dilation and systolic dysfunction without rational conditions, which can lead to progressive heart failure and sudden cardiac death. Most of the pathogenic genes have been reported in adult population by locus mapping in familial cases and animal model studies. However, it still remains challenging to decipher the role of genetics in the etiology of pediatric DCM. We applied whole-exome sequencing (WES) for 30 sporadic pediatric DCM subjects and 100 non-DCM local controls. We identified the pathogenic mutations using bioinformatics tools based on genomic strategies synergistically and confirmed mutations by Sanger sequencing. We identified compound heterozygous nonsense mutations in DSP (c.3799C > T, p.R1267X; c.4444G > T, p.E1482X). In sporadic cases, the two heterozygous mutations in XIRP2 were identified. Then we performed an exome-wide association study with 30 case and 100 control subjects. Interestingly, we could not identify TTN truncating variants in all cases. Collectively, we observed a significant risk signal between carriers of TTN deleterious missense variants and DCM risk (odds ratio 4.0, 95% confidence interval 1.1–22.2, p = 3.12 × 10−2). Our observations expanded the spectrum of mutations and were valuable in the pre- and postnatal screening and genetic diagnosis for DCM.
引用
收藏
页码:950 / 957
页数:7
相关论文
共 50 条
  • [41] Whole-exome sequencing reveals insights into genetic susceptibility to Congenital Zika Syndrome
    Borda, Victor
    da Silva Francisco Junior, Ronaldo
    Carvalho, Joseane B.
    Morais, Guilherme L.
    Rossi, Atila Duque
    Pezzuto, Paula
    Azevedo, Girlene S.
    Schamber-Reis, Bruno L.
    Portari, Elyzabeth A.
    Melo, Adriana
    Moreira, Maria Elisabeth L.
    Guida, Leticia C.
    Cunha, Daniela P.
    Gomes, Leonardo
    Vasconcelos, Zilton F. M.
    Faucz, Fabio R.
    Tanuri, Amilcar
    Stratakis, Constantine A.
    Aguiar, Renato S.
    Cardoso, Cynthia Chester
    Ribeiro de Vasconcelos, Ana Tereza
    PLOS NEGLECTED TROPICAL DISEASES, 2021, 15 (06):
  • [42] Whole-exome sequencing in UK Biobank reveals rare genetic architecture for depression
    Tian, Ruoyu
    Ge, Tian
    Kweon, Hyeokmoon
    Rocha, Daniel B.
    Lam, Max
    Liu, Jimmy Z.
    Singh, Kritika
    Levey, Daniel F.
    Gelernter, Joel
    Stein, Murray B.
    Tsai, Ellen A.
    Huang, Hailiang
    Chabris, Christopher F.
    Lencz, Todd
    Runz, Heiko
    Chen, Chia-Yen
    NATURE COMMUNICATIONS, 2024, 15 (01)
  • [43] Whole-exome sequencing reveals genetic variants that may play a role in neurocytomas
    Sapna Khowal
    Dongyun Zhang
    William H Yong
    Anthony P. Heaney
    Journal of Neuro-Oncology, 2024, 166 : 471 - 483
  • [44] Whole-exome sequencing in UK Biobank reveals rare genetic architecture for depression
    Ruoyu Tian
    Tian Ge
    Hyeokmoon Kweon
    Daniel B. Rocha
    Max Lam
    Jimmy Z. Liu
    Kritika Singh
    Daniel F. Levey
    Joel Gelernter
    Murray B. Stein
    Ellen A. Tsai
    Hailiang Huang
    Christopher F. Chabris
    Todd Lencz
    Heiko Runz
    Chia-Yen Chen
    Nature Communications, 15
  • [45] Whole-exome sequencing reveals rare genetic variations in ovarian cell tumor
    Kim, Seungyeon
    Kim, Songmi
    Mun, Seyoung
    Kwak, Yongsik
    Suh, Kwang-Sun
    Choi, Song-Yi
    Han, Kyudong
    BOSNIAN JOURNAL OF BASIC MEDICAL SCIENCES, 2022, 22 (03) : 403 - 411
  • [46] Whole-exome sequencing reveals genetic variants that may play a role in neurocytomas
    Khowal, Sapna
    Zhang, Dongyun
    Yong, William H.
    Heaney, Anthony P.
    JOURNAL OF NEURO-ONCOLOGY, 2024, 166 (03) : 471 - 483
  • [47] Whole-Exome Sequencing in Evaluation of Thrombophilia: Characterization of Novel Genetic Variants
    Gu, Sean
    Shevell, Lauren
    Tormey, Christopher
    Rinder, Henry
    Lee, Alfred
    AMERICAN JOURNAL OF CLINICAL PATHOLOGY, 2019, 152 : S35 - S35
  • [48] Specific genetic aberrations of parathyroid in Chinese patients with tertiary hyperparathyroidism using whole-exome sequencing
    Li, Lei
    Sheng, Qixuan
    Zeng, Huajin
    Li, Wei
    Wang, Qiang
    Ma, Guanjun
    Xu, Xinyun
    Qiu, Ming
    Zhang, Wei
    Shan, Chengxiang
    FRONTIERS IN ENDOCRINOLOGY, 2023, 14
  • [49] Role of Whole-exome Sequencing in Phenotype Classification and Clinical Treatment of Pediatric Restrictive Cardiomyopathy
    Ding Wen-Hong
    Han Ling
    Xiao Yan-Yan
    Mo Ying
    Yang Jing
    Wang Xiao-Fang
    Jin Mei
    中华医学杂志英文版, 2017, 130 (23) : 2823 - 2828
  • [50] Role of Whole-exome Sequencing in Phenotype Classification and Clinical Treatment of Pediatric Restrictive Cardiomyopathy
    Ding, Wen-Hong
    Han, Ling
    Xiao, Yan-Yan
    Mo, Ying
    Yang, Jing
    Wang, Xiao-Fang
    Jin, Mei
    CHINESE MEDICAL JOURNAL, 2017, 130 (23) : 2823 - 2828