Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes

被引：0
|
作者：
Johannes Alneberg
Christofer M. G. Karlsson
Anna-Maria Divne
Claudia Bergin
Felix Homa
Markus V. Lindh
Luisa W. Hugerth
Thijs J. G. Ettema
Stefan Bertilsson
Anders F. Andersson
Jarone Pinhassi
机构：
[1] KTH Royal Institute of Technology,School of Engineering Sciences in Chemistry, Biotechnology and Health, Department of Gene Technology, Science for Life Laboratory
[2] Linnaeus University,Centre for Ecology and Evolution in Microbial Model Systems, EEMiS
[3] Uppsala University,Department of Cell and Molecular Biology, SciLifeLab
[4] Karolinska Institutet,Present address: Science for Life Laboratory, Department of Molecular, Tumour and Cell Biology, Centre for Translational Microbiome Research
[5] Lund University,Present address: Department of Biology
[6] Uppsala University,Department of Ecology and Genetics, Limnology, Science for Life Laboratory
来源：
Microbiome | / 6卷
关键词：
Single-amplified genomes; Metagenome-assembled genomes; Metagenomics; Binning; Single-cell genomics;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [31] Recovery of metagenome-assembled genomes from the phyllosphere of 110 rice genotypes
    Su, Pin
    Wicaksono, Wisnu Adi
    Li, Chenggang
    Michl, Kristina
    Berg, Gabriele
    Wang, Dan
    Xiao, Youlun
    Huang, Renyan
    Kang, Houxiang
    Zhang, Deyong
    Cernava, Tomislav
    Liu, Yong
    SCIENTIFIC DATA, 2022, 9 (01)
  • [32] Recovery of metagenome-assembled genomes from the phyllosphere of 110 rice genotypes
    Pin Su
    Wisnu Adi Wicaksono
    Chenggang Li
    Kristina Michl
    Gabriele Berg
    Dan Wang
    Youlun Xiao
    Renyan Huang
    Houxiang Kang
    Deyong Zhang
    Tomislav Cernava
    Yong Liu
    Scientific Data, 9
  • [33] Metagenome-Assembled Genomes from Appalachian Acid Mine Drainage Sites
    Williams, Caden
    Macalady, Jennifer
    Grettenberger, Christen
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2023, 12 (05):
  • [34] Challenges in estimating effective population sizes from metagenome-assembled genomes
    Wang, Xiaojun
    Feng, Xiaoyuan
    FRONTIERS IN MICROBIOLOGY, 2024, 14
  • [35] Metagenome-assembled genomes from enrichment cultures grown on xenobiotic solvents
    Jia, Chongjian
    Wu, Cuiyu
    Li, Yingshi
    Wang, Shuhuan
    Liu, Jinhuan
    Liu, Jiying
    Su, Haimei
    Tian, Xin
    Li, Junhui
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2024, 13 (06):
  • [36] Unexpected absence of ribosomal protein genes from metagenome-assembled genomes
    Mise, Kazumori
    Iwasaki, Wataru
    ISME COMMUNICATIONS, 2022, 2 (01):
  • [37] Recovery of 1887 metagenome-assembled genomes from the South China Sea
    Shuaishuai Xu
    Hailong Huang
    Songze Chen
    Zain Ul Arifeen Muhammad
    Wenya Wei
    Wei Xie
    Haibo Jiang
    Shengwei Hou
    Scientific Data, 11
  • [38] Open pangenome of Lactococcus lactis generated by a combination of metagenome-assembled genomes and isolate genomes
    Zhai, Yiting
    Wei, Chaochun
    FRONTIERS IN MICROBIOLOGY, 2022, 13
  • [39] CheckV assesses the quality and completeness of metagenome-assembled viral genomes
    Nayfach, Stephen
    Camargo, Antonio Pedro
    Schulz, Frederik
    Eloe-Fadrosh, Emiley
    Roux, Simon
    Kyrpides, Nikos C.
    NATURE BIOTECHNOLOGY, 2021, 39 (05) : 578 - +
  • [40] CRISPR detection in metagenome-assembled genomes (MAGs) of coal mine
    Achudhan, Arunmozhi Bharathi
    Kannan, Priya
    Saleena, Lilly M.
    FUNCTIONAL & INTEGRATIVE GENOMICS, 2023, 23 (02)
12345