An efficient simulated annealing algorithm for the RNA secondary structure prediction with Pseudoknots

被引:0
|
作者
Zhang Kai
Wang Yuting
Lv Yulin
Liu Jun
He Juanjuan
机构
[1] Wuhan University of Science and Technology,School of Computer Science
[2] Hubei Province Key Laboratory of Intelligent Information Processing and Real-time Industrial System,undefined
来源
BMC Genomics | / 20卷
关键词
RNA secondary structure; Pseudoknot; Simulated annealing algorithm; Minimum free energy;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [31] RNA PSEUDOKNOTS - STRUCTURE, DETECTION, AND PREDICTION
    PLEIJ, CWA
    BOSCH, L
    METHODS IN ENZYMOLOGY, 1989, 180 : 289 - 303
  • [32] Protein secondary structure prediction using decision fusion of genetic algorithm and simulated annealing algorithm
    Akkaladevi, S
    Katangur, AK
    Belkasim, S
    Pan, Y
    PROCEEDINGS OF THE 2005 INTERNATIONAL CONFERENCE ON NEURAL NETWORKS AND BRAIN, VOLS 1-3, 2005, : 467 - 472
  • [33] Prediction Nucleic Acid Secondary Structure with Planar Pseudoknots and Genetic Algorithm
    Zhang, Kai
    Huang, Xinquan
    Hu, Wei
    Liu, Jun
    BIO-INSPIRED COMPUTING - THEORIES AND APPLICATIONS, BIC-TA 2014, 2014, 472 : 571 - 577
  • [34] Evolutionary Algorithm for RNA Secondary Structure Prediction Based on Simulated SHAPE Data
    Montaseri, Soheila
    Ganjtabesh, Mohammad
    Zare-Mirakabad, Fatemeh
    PLOS ONE, 2016, 11 (11):
  • [35] Bi-objective integer programming for RNA secondary structure prediction with pseudoknots
    Audrey Legendre
    Eric Angel
    Fariza Tahi
    BMC Bioinformatics, 19
  • [36] Dynamic Iterated Algorithm for RNA Pseudoknots Prediction
    Li, Hengwu
    FRONTIERS OF MANUFACTURING AND DESIGN SCIENCE, PTS 1-4, 2011, 44-47 : 3365 - 3369
  • [37] Modified Free Energy Model to improve RNA secondary structure prediction with pseudoknots
    Tong, Kwok-Kit
    Cheung, Kwan-Yau
    Lee, Kin-Hong
    Leung, Kwong-Sak
    2013 IEEE 13TH INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOENGINEERING (BIBE), 2013,
  • [38] An efficient dynamic programming algorithm and implementation for RNA secondary structure prediction
    Tan, GM
    Liu, XC
    Sun, NH
    COMPUTATIONAL SCIENCE - ICCS 2005, PT 2, 2005, 3515 : 869 - 876
  • [39] Bi-objective integer programming for RNA secondary structure prediction with pseudoknots
    Legendre, Audrey
    Angel, Eric
    Tahi, Fariza
    BMC BIOINFORMATICS, 2018, 19
  • [40] A New Parameterized Algorithm for Predicting the Secondary Structure of RNA Sequences Including Pseudoknots
    Song, Yinglei
    Liu, Chunmei
    Li, Yongzhong
    COMPUTER JOURNAL, 2015, 58 (11): : 3114 - 3125