Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022T)

被引:0
|
作者
Amrita Pati
Kurt LaButti
Rüdiger Pukall
Matt Nolan
Tijana Glavina Del Rio
Hope Tice
Jan-Fang Cheng
Susan Lucas
Feng Chen
Alex Copeland
Natalia Ivanova
Konstantinos Mavromatis
Natalia Mikhailova
Sam Pitluck
David Bruce
Lynne Goodwin
Miriam Land
Loren Hauser
Yun-Juan Chang
Cynthia D. Jeffries
Amy Chen
Krishna Palaniappan
Patrick Chain
Thomas Brettin
Johannes Sikorski
Manfred Rohde
Markus Göker
Jim Bristow
Jonathan A. Eisen
Victor Markowitz
Philip Hugenholtz
Nikos C. Kyrpides
Hans-Peter Klenk
Alla Lapidus
机构
[1] DOE Joint Genome Institute,Bioscience Division
[2] DSMZ - German Collection of Microorganisms and Cell Cultures GmbH,Biological Data Management and Technology Center
[3] Los Alamos National Laboratory,undefined
[4] Oak Ridge National Laboratory,undefined
[5] Lawrence Berkeley National Laboratory,undefined
[6] HZI - Helmholtz Centre for Infection Research,undefined
[7] University of California Davis Genome Center,undefined
来源
关键词
thermophile; obligate aerobic; sewage sludge isolate; pleomorphic; non-motile; non-sporeforming; GEBA;
D O I
暂无
中图分类号
学科分类号
摘要
Sphaerobacter thermophilus Demharter et al. 1989 is the sole and type species of the genus Sphaerobacter, which is the type genus of the family Sphaerobacteraceae, the order Sphaerobacterales and the subclass Sphaerobacteridae. Phylogenetically, it belongs to the genomically little studied class of the Thermomicrobia in the bacterial phylum Chloroflexi. Here, the genome of strain S 6022T is described which is an obligate aerobe that was originally isolated from an aerated laboratory-scale fermentor that was pulse fed with municipal sewage sludge. We describe the features of this organism, together with the complete genome and annotation. This is the first complete genome sequence of the thermomicrobial subclass Sphaerobacteridae, and the second sequence from the chloroflexal class Thermomicrobia. The 3,993,764 bp genome with its 3,525 protein-coding and 57 RNA genes is a part of the GenomicEncyclopedia ofBacteria andArchaea project.
引用
收藏
页码:49 / 56
页数:7
相关论文
共 50 条
  • [41] Complete genome sequence of Desulfurispirillum indicum strain S5T
    Elisabetta Bini
    Ines Rauschenbach
    Priya Narasingarao
    Valentin Starovoytov
    Lauren Hauser
    Cynthia D. Jeffries
    Miriam Land
    David Bruce
    Chris Detter
    Lynne Goodwin
    Shunsheng Han
    Brittany Held
    Roxanne Tapia
    Alex Copeland
    Natalia Ivanova
    Natalia Mikhailova
    Matt Nolan
    Amrita Pati
    Len Pennacchio
    Sam Pitluck
    Tanja Woyke
    Max Häggblom
    Standards in Genomic Sciences, 2011, 5 : 371 - 378
  • [42] Complete genome sequence of Desulfurispirillum indicum strain S5T
    Bini, Elisabetta
    Rauschenbach, Ines
    Narasingarao, Priya
    Starovoytov, Valentin
    Hauser, Lauren
    Jeffries, Cynthia D.
    Land, Miriam
    Bruce, David
    Detter, Chris
    Goodwin, Lynne
    Han, Shunsheng
    Held, Brittany
    Tapia, Roxanne
    Copeland, Alex
    Ivanova, Natalia
    Mikhailova, Natalia
    Nolan, Matt
    Pati, Amrita
    Pennacchio, Len
    Pitluck, Sam
    Woyke, Tanja
    Haeggblom, Max
    STANDARDS IN GENOMIC SCIENCES, 2011, 5 (03): : 371 - 378
  • [43] Complete Genome Sequence of the Citrobacter freundii Type Strain
    Wan, Kenneth H.
    Park, Soo
    Hess, Becky M.
    Neff, Michael J.
    Booth, Benjamin W.
    Celniker, Susan E.
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2020, 9 (19):
  • [44] Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845T)
    Mavrommatis, Konstantinos
    Gronow, Sabine
    Saunders, Elizabeth
    Land, Miriam
    Lapidus, Alla
    Copeland, Alex
    Del Rio, Tijana Glavina
    Nolan, Matt
    Lucas, Susan
    Chen, Feng
    Tice, Hope
    Cheng, Jan-Fang
    Bruce, David
    Goodwin, Lynne
    Pitluck, Sam
    Pati, Amrita
    Ivanova, Natalia
    Chen, Amy
    Palaniappan, Krishna
    Chain, Patrick
    Hauser, Loren
    Chang, Yun-Juan
    Jeffries, Cynthia D.
    Brettin, Thomas
    Detter, John C.
    Han, Cliff
    Bristow, James
    Goeker, Markus
    Rohde, Manfred
    Eisen, Jonathan A.
    Markowitz, Victor
    Kyrpides, Nikos C.
    Klenk, Hans-Peter
    Hugenholtz, Philip
    STANDARDS IN GENOMIC SCIENCES, 2009, 1 (02): : 101 - 109
  • [45] Complete genome sequence of Sanguibacter keddieii type strain (ST-74T)
    Natalia Ivanova
    Johannes Sikorski
    David Sims
    Thomas Brettin
    John C. Detter
    Cliff Han
    Alla Lapidus
    Alex Copeland
    Tijana Glavina Del Rio
    Matt Nolan
    Feng Chen
    Susan Lucas
    Hope Tice
    Jan-Fang Cheng
    David Bruce
    Lynne Goodwin
    Sam Pitluck
    Amrita Pati
    Konstantinos Mavromatis
    Amy Chen
    Krishna Palaniappan
    Patrik D’haeseleer
    Patrick Chain
    Jim Bristow
    Jonathan A. Eisen
    Victor Markowitz
    Philip Hugenholtz
    Markus Göker
    Rüdiger Pukall
    Hans-Peter Klenk
    Nikos C. Kyrpides
    Standards in Genomic Sciences, 2009, 1 : 110 - 118
  • [46] Complete genome sequence of Parvibaculum lavamentivorans type strain (DS-1T)
    David Schleheck
    Michael Weiss
    Sam Pitluck
    David Bruce
    Miriam L. Land
    Shunsheng Han
    Elizabeth Saunders
    Roxanne Tapia
    Chris Detter
    Thomas Brettin
    James Han
    Tanja Woyke
    Lynne Goodwin
    Len Pennacchio
    Matt Nolan
    Alasdair M. Cook
    Staffan Kjelleberg
    Torsten Thomas
    Standards in Genomic Sciences, 2011, 5 : 298 - 310
  • [47] Complete genome sequence of Kribbella flavida type strain (IFO 14399T)
    Rüdiger Pukall
    Alla Lapidus
    Tijana Glavina Del Rio
    Alex Copeland
    Hope Tice
    Jan-Fang Cheng
    Susan Lucas
    Feng Chen
    Matt Nolan
    Kurt LaButti
    Amrita Pati
    Natalia Ivanova
    Konstantinos Mavromatis
    Natalia Mikhailova
    Sam Pitluck
    David Bruce
    Lynne Goodwin
    Miriam Land
    Loren Hauser
    Yun-Juan Chang
    Cynthia D. Jeffries
    Amy Chen
    Krishna Palaniappan
    Patrick Chain
    Manfred Rohde
    Markus Göker
    Jim Bristow
    Jonathan A. Eisen
    Victor Markowitz
    Philip Hugenholtz
    Nikos C. Kyrpides
    Hans-Peter Klenk
    Thomas Brettin
    Standards in Genomic Sciences, 2010, 2 : 186 - 193
  • [48] Complete genome sequence of Desulfohalobium retbaense type strain (HR100T)
    Spring, Stefan
    Nolan, Matt
    Lapidus, Alla
    Del Rio, Tijana Glavina
    Copeland, Alex
    Tice, Hope
    Cheng, Jan-Fang
    Lucas, Susan
    Land, Miriam
    Chen, Feng
    Bruce, David
    Goodwin, Lynne
    Pitluck, Sam
    Ivanova, Natalia
    Mavromatis, Konstantinos
    Mikhailova, Natalia
    Pati, Amrita
    Chen, Amy
    Palaniappan, Krishna
    Hauser, Loren
    Chang, Yun-Juan
    Jeffries, Cynthia D.
    Munk, Christine
    Kiss, Hajnalka
    Chain, Patrick
    Han, Cliff
    Brettin, Thomas
    Detter, John C.
    Schueler, Esther
    Goeker, Markus
    Rohde, Manfred
    Bristow, Jim
    Eisen, Jonathan A.
    Markowitz, Victor
    Hugenholtz, Philip
    Kyrpides, Nikos C.
    Klenk, Hans-Peter
    STANDARDS IN GENOMIC SCIENCES, 2010, 2 (01): : 38 - 48
  • [49] Complete genome sequence of Kosakonia sacchari type strain SP1T
    Mingyue Chen
    Bo Zhu
    Li Lin
    Litao Yang
    Yangrui Li
    Qianli An
    Standards in Genomic Sciences, 2014, 9 : 1311 - 1318
  • [50] Complete genome sequence of Thermomonospora curvata type strain (B9T)
    Olga Chertkov
    Johannes Sikorski
    Matt Nolan
    Alla Lapidus
    Susan Lucas
    Tijana Glavina Del Rio
    Hope Tice
    Jan-Fang Cheng
    Lynne Goodwin
    Sam Pitluck
    Konstantinos Liolios
    Natalia Ivanova
    Konstantinos Mavromatis
    Natalia Mikhailova
    Galina Ovchinnikova
    Amrita Pati
    Amy Chen
    Krishna Palaniappan
    Olivier D. Ngatchou Djao
    Miriam Land
    Loren Hauser
    Yun-Juan Chang
    Cynthia D. Jeffries
    Thomas Brettin
    Cliff Han
    John C. Detter
    Manfred Rohde
    Markus Göker
    Tanja Woyke
    James Bristow
    Jonathan A. Eisen
    Victor Markowitz
    Philip Hugenholtz
    Hans-Peter Klenk
    Nikos C. Kyrpides
    Standards in Genomic Sciences, 2011, 4 : 13 - 22