Stability of multiple alignments and phylogenetic trees: an analysis of ABC-transporter proteins family

被引:0
|
作者
Holger Wagner
Burkhard Morgenstern
Andreas Dress
机构
[1] Bielefeld University,FSPM, Faculty of Mathematics
[2] Institute of Microbiology and Genetics,undefined
[3] University of Göttingen,undefined
[4] CAS-MPG Partner Institute for Computational Biology,undefined
[5] Max Planck Institute for Mathematics in the Sciences,undefined
关键词
Pairwise Alignment; Guide Tree; Sequence Family; Alignment Procedure; Repetitive Structure;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [21] Comparative and phylogenetic analysis of zinc transporter genes/proteins in plants
    Vatansever, Recep
    Ozyigit, Ibrahim Ilker
    Filiz, Ertugrul
    TURKISH JOURNAL OF BIOLOGY, 2016, 40 (03) : 600 - 611
  • [22] Bioinformatic analysis of the ABC transporter protein family and their function in Penicillium digitatum
    Shen, Xuemeng
    Tan, Xiaoli
    Wang, Ziting
    Meng, Kuixian
    Tao, Nengguo
    PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY, 2023, 128
  • [23] STREPTOMYCES-ANTIBIOTICUS CONTAINS AT LEAST 3 OLEANDOMYCIN-RESISTANCE DETERMINANTS, ONE OF WHICH SHOWS SIMILARITY WITH PROTEINS OF THE ABC-TRANSPORTER SUPERFAMILY
    RODRIGUEZ, AM
    OLANO, C
    VILCHES, C
    MENDEZ, C
    SALAS, JA
    MOLECULAR MICROBIOLOGY, 1993, 8 (03) : 571 - 582
  • [24] Use of a database of structural alignments and phylogenetic trees in investigating the relationship between sequence and structural variability among homologous proteins
    Balaji, S
    Srinivasan, N
    PROTEIN ENGINEERING, 2001, 14 (04): : 219 - 226
  • [25] Molecular phylogenetic analysis of methylenetetrahydrofolate reductase family of proteins
    Kasap, Murat
    Sazci, Ali
    Ergul, Emel
    Akpinar, Gurler
    MOLECULAR PHYLOGENETICS AND EVOLUTION, 2007, 42 (03) : 838 - 846
  • [26] Phylogenetic analysis of the ING family of PHD finger proteins
    He, GHY
    Helbing, CC
    Wagner, MJ
    Sensen, CW
    Riabowol, K
    MOLECULAR BIOLOGY AND EVOLUTION, 2005, 22 (01) : 104 - 116
  • [27] Cervimycin C resistance in Bacillus subtilis is due to a promoter up-mutation and increased mRNA stability of the constitutive ABC-transporter gene bmrA
    Kruegel, Hans
    Licht, Andreas
    Biedermann, Gesine
    Petzold, Andreas
    Lassak, Juergen
    Hupfer, Yvonne
    Schlott, Bernhard
    Hertweck, Christian
    Platzer, Matthias
    Brantl, Sabine
    Saluz, Hans-Peter
    FEMS MICROBIOLOGY LETTERS, 2010, 313 (02) : 155 - 163
  • [28] Structure-function analysis of the nucleotide-binding domain of the ABC-transporter haemolysin B from E. coli
    Zaitseva, J
    Wiedenmann, A
    Holland, B
    Schmitt, L
    BIOPHYSICAL JOURNAL, 2004, 86 (01) : 77A - 77A
  • [29] Genome-wide transcriptional analysis of sterol uptake reveals altered expression of an ABC-transporter and an oxysterol binding protein.
    Wilcox, LJ
    Balderes, DA
    Tinkelenberg, AH
    Sturley, SL
    CIRCULATION, 2000, 102 (18) : 311 - 311
  • [30] Expression of transporter proteins of the ABC, SLC and SLCO family in glioblastoma stem-like cells
    Bien-Moeller, S.
    Arlt, A.
    Kaiser, S.
    Grober, A.
    Jedlitschky, G.
    Grube, M.
    Oswald, S.
    Marx, S.
    Rauch, B. H.
    Schroeder, H.
    NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY, 2018, 391 : S71 - S71