Scaling statistical multiple sequence alignment to large datasets

被引:0
|
作者
Michael Nute
Tandy Warnow
机构
[1] University of Illinois at Urbana-Champaign,Department of Statistics
[2] University of Illinois at Urbana-Champaign,Department of Computer Science
[3] University of Illinois at Urbana-Champaign,Department of Bioengineering
[4] University of Illinois at Urbana-Champaign,National Center for Supercomputing Applications
[5] University of Illinois at Urbana-Champaign,Carl R. Woese Institute for Genomic Biology
来源
BMC Genomics | / 17卷
关键词
Multiple sequence alignment; Boosting; MCMC;
D O I
暂无
中图分类号
学科分类号
摘要
引用
下载
收藏
相关论文
共 50 条
  • [1] Scaling statistical multiple sequence alignment to large datasets
    Nute, Michael
    Warnow, Tandy
    BMC GENOMICS, 2016, 17
  • [2] Kalign 3: multiple sequence alignment of large datasets
    Lassmann, Timo
    BIOINFORMATICS, 2020, 36 (06) : 1928 - 1929
  • [3] Benchmark datasets and software for developing and testing methods for large-scale multiple sequence alignment and phylogenetic inference
    Linder, C. Randal
    Liu, Rahul SuriKevin
    Warnow, Tandy
    PLOS CURRENTS-TREE OF LIFE, 2010,
  • [4] Accelerated large-scale multiple sequence alignment
    Scott Lloyd
    Quinn O Snell
    BMC Bioinformatics, 12
  • [5] Accelerated large-scale multiple sequence alignment
    Lloyd, Scott
    Snell, Quinn O.
    BMC BIOINFORMATICS, 2011, 12
  • [6] PASTA: Ultra-Large Multiple Sequence Alignment
    Mirarab, Siavash
    Nguyen, Nam
    Warnow, Tandy
    RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY, RECOMB2014, 2014, 8394 : 177 - 191
  • [7] Multiple Sequence Alignment Based Upon Statistical Approach of Curve Fitting
    Jha, Vineet
    Mazumder, Mohit
    Bhuyan, Hrishikesh
    Jha, Ashwani
    Nagar, Abhinav
    PATTERN RECOGNITION AND MACHINE INTELLIGENCE, PROCEEDINGS, 2009, 5909 : 184 - 192
  • [8] Large scale multiple sequence alignment with simultaneous phylogeny inference
    Parmentier, Gilles
    Trystram, Denis
    Zola, Jaroslaw
    JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING, 2006, 66 (12) : 1534 - 1545
  • [9] A PARALLEL ALGORITHM FOR LARGE-SCALE MULTIPLE SEQUENCE ALIGNMENT
    Lopes, Heitor S.
    Erig Lima, Carlos R.
    Moritz, Guilherme L.
    COMPUTING AND INFORMATICS, 2010, 29 (06) : 1233 - 1250
  • [10] Evaluating Statistical Multiple Sequence Alignment in Comparison to Other Alignment Methods on Protein Data Sets
    Nute, Michael
    Saleh, Ehsan
    Warnow, Tandy
    SYSTEMATIC BIOLOGY, 2019, 68 (03) : 396 - 411