ChIP-chip versus ChIP-seq: Lessons for experimental design and data analysis

被引:0
|
作者
Joshua WK Ho
Eric Bishop
Peter V Karchenko
Nicolas Nègre
Kevin P White
Peter J Park
机构
[1] Brigham and Women's Hospital,Department of Medicine
[2] and Harvard Medical School,Center for Biomedical Informatics
[3] Harvard Medical School,Program in Bioinformatics
[4] Boston University,Institute for Genomics and Systems Biology
[5] University of Chicago,Informatics Program
[6] Children's Hospital,undefined
来源
BMC Genomics | / 12卷
关键词
Sequencing Depth; Enrichment Region; Peak Calling; Peak Caller; ChIP Profile;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [21] ChIPXpress: using publicly available gene expression data to improve ChIP-seq and ChIP-chip target gene ranking
    Wu, George
    Ji, Hongkai
    [J]. BMC BIOINFORMATICS, 2013, 14
  • [22] ChIPXpress: using publicly available gene expression data to improve ChIP-seq and ChIP-chip target gene ranking
    George Wu
    Hongkai Ji
    [J]. BMC Bioinformatics, 14
  • [23] ChIP-chip: Data, model, and analysis
    Zheng, Ming
    Barrera, Leah O.
    Ren, Bing
    Wu, Ying Nian
    [J]. BIOMETRICS, 2007, 63 (03) : 787 - 796
  • [24] ChIP-chip及ChIP-seq的应用现状及其发展前景
    孔令雯
    董竞成
    [J]. 国际检验医学杂志, 2014, 35 (10) : 1309 - 1312
  • [26] Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP)
    Kerstin Kaufmann
    Jose M Muiño
    Magne Østerås
    Laurent Farinelli
    Pawel Krajewski
    Gerco C Angenent
    [J]. Nature Protocols, 2010, 5 : 457 - 472
  • [27] Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP)
    Kaufmann, Kerstin
    Muino, Jose M.
    Osteras, Magne
    Farinelli, Laurent
    Krajewski, Pawel
    Angenent, Gerco C.
    [J]. NATURE PROTOCOLS, 2010, 5 (03) : 457 - 472
  • [28] A Widespread Distribution of Genomic CeMyoD Binding Sites Revealed and Cross Validated by ChIP-Chip and ChIP-Seq Techniques
    Lei, Haiyan
    Fukushige, Tetsunari
    Niu, Wei
    Sarov, Mihail
    Reinke, Valerie
    Krause, Michael
    [J]. PLOS ONE, 2010, 5 (12):
  • [29] BayesPeak: Bayesian analysis of ChIP-seq data
    Spyrou, Christiana
    Stark, Rory
    Lynch, Andy G.
    Tavare, Simon
    [J]. BMC BIOINFORMATICS, 2009, 10 : 299
  • [30] A Statistical Framework for the Analysis of ChIP-Seq Data
    Kuan, Pei Fen
    Chung, Dongjun
    Pan, Guangjin
    Thomson, James A.
    Stewart, Ron
    Keles, Suenduez
    [J]. JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 2011, 106 (495) : 891 - 903