Binning long reads in metagenomics datasets using composition and coverage information

被引:0
|
作者
Anuradha Wickramarachchi
Yu Lin
机构
[1] Australian National University,School of Computing
关键词
Metagenomics binning; Long reads; Machine learning; Clustering;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [21] Testing the advantages and disadvantages of short- and long- read eukaryotic metagenomics using simulated reads
    William S. Pearman
    Nikki E. Freed
    Olin K. Silander
    BMC Bioinformatics, 21
  • [22] Testing the advantages and disadvantages of short- and long- read eukaryotic metagenomics using simulated reads
    Pearman, William S.
    Freed, Nikki E.
    Silander, Olin K.
    BMC BIOINFORMATICS, 2020, 21 (01)
  • [23] Short clones or long clones? A simulation study on the use of paired reads in metagenomics
    Suparna Mitra
    Max Schubach
    Daniel H Huson
    BMC Bioinformatics, 11
  • [24] Short clones or long clones? A simulation study on the use of paired reads in metagenomics
    Mitra, Suparna
    Schubach, Max
    Huson, Daniel H.
    BMC BIOINFORMATICS, 2010, 11
  • [25] A new parallel pipeline for DNA methylation analysis of long reads datasets
    Ricardo Olanda
    Mariano Pérez
    Juan M. Orduña
    Joaquín Tárraga
    Joaquín Dopazo
    BMC Bioinformatics, 18
  • [26] A new parallel pipeline for DNA methylation analysis of long reads datasets
    Olanda, Ricardo
    Perez, Mariano
    Orduna, Juan M.
    Tarraga, Joaqun
    Dopazo, Joaquin
    BMC BIOINFORMATICS, 2017, 18
  • [27] Benchmarking datasets for assembly-based variant calling using high-fidelity long reads
    Lee, Hyunji
    Kim, Jun
    Lee, Junho
    BMC GENOMICS, 2023, 24 (01)
  • [28] Benchmarking datasets for assembly-based variant calling using high-fidelity long reads
    Hyunji Lee
    Jun Kim
    Junho Lee
    BMC Genomics, 24
  • [29] BMC3C: binning metagenomic contigs using codon usage, sequence composition and read coverage
    Yu, Guoxian
    Jiang, Yuan
    Wang, Jun
    Zhang, Hao
    Luo, Haiwei
    BIOINFORMATICS, 2018, 34 (24) : 4172 - 4179
  • [30] Long-Reads-Based Metagenomics in Clinical Diagnosis With a Special Focus on Fungal Infections
    Hoang, Minh Thuy Vi
    Irinyi, Laszlo
    Hu, Yiheng
    Schwessinger, Benjamin
    Meyer, Wieland
    FRONTIERS IN MICROBIOLOGY, 2022, 12