Gene rearrangement analysis and ancestral order inference from chloroplast genomes with inverted repeat

被引：0
|
作者：
Feng Yue
Liying Cui
Claude W dePamphilis
Bernard ME Moret
Jijun Tang
机构：
[1] University of South Carolina,Department of Computer Science and Engineering
[2] Pennsylvania State University,Department of Biology
[3] Swiss Federal Institute of Technology (EPFL),School of Computer and Communication Sciences
[4] EPFL IC LCBB,undefined
[5] INJ 230,undefined
[6] Swiss Institute of Bioinformatics,undefined
来源：
BMC Genomics | / 9卷
关键词：
Gene Order; Gene Content; Inverted Repeat; Chloroplast Genome; Edit Distance;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
下载
收藏
相关论文
共 50 条
  • [21] GENE REARRANGEMENTS IN CHLAMYDOMONAS CHLOROPLAST DNAS ARE ACCOUNTED FOR BY INVERSIONS AND BY THE EXPANSION/CONTRACTION OF THE INVERTED REPEAT
    BOUDREAU, E
    TURMEL, M
    PLANT MOLECULAR BIOLOGY, 1995, 27 (02) : 351 - 364
  • [22] Characterization of Chloroplast Genomes From Two Salvia Medicinal Plants and Gene Transfer Among Their Mitochondrial and Chloroplast Genomes
    Gao, Chengwen
    Wu, Chuanhong
    Zhang, Qian
    Zhao, Xia
    Wu, Mingxuan
    Chen, Ruirui
    Zhao, Yalin
    Li, Zhiqiang
    FRONTIERS IN GENETICS, 2020, 11
  • [23] Conserved Gene Order and Expanded Inverted Repeats Characterize Plastid Genomes of Thalassiosirales
    Sabir, Jamal S. M.
    Yu, Mengjie
    Ashworth, Matt P.
    Baeshen, Nabih A.
    Baeshen, Mohammad N.
    Bahieldin, Ahmed
    Theriot, Edward C.
    Jansen, Robert K.
    PLOS ONE, 2014, 9 (09):
  • [24] The mitochondrial and chloroplast genomes of the haptophyte Chrysochromulina tobin contain unique repeat structures and gene profiles
    Hovde, Blake T.
    Starkenburg, Shawn R.
    Hunsperger, Heather M.
    Mercer, Laina D.
    Deodato, Chloe R.
    Jha, Ramesh K.
    Chertkov, Olga
    Monnat, Raymond J., Jr.
    Cattolico, Rose Ann
    BMC GENOMICS, 2014, 15
  • [25] The mitochondrial and chloroplast genomes of the haptophyte Chrysochromulina tobin contain unique repeat structures and gene profiles
    Blake T Hovde
    Shawn R Starkenburg
    Heather M Hunsperger
    Laina D Mercer
    Chloe R Deodato
    Ramesh K Jha
    Olga Chertkov
    Raymond J Monnat
    Rose Ann Cattolico
    BMC Genomics, 15
  • [26] SEQUENCE OF THE TRNH GENE AND THE INVERTED REPEAT STRUCTURE DELETION SITE OF THE BROAD BEAN CHLOROPLAST GENOME
    HERDENBERGER, F
    PILLAY, DTN
    STEINMETZ, A
    NUCLEIC ACIDS RESEARCH, 1990, 18 (05) : 1297 - 1297
  • [27] Inferring genome-scale rearrangement phylogeny and ancestral gene order: a Drosophilacase study
    Arjun Bhutkar
    William M Gelbart
    Temple F Smith
    Genome Biology, 8
  • [28] Variability and evolution of gene order rearrangement in mitochondrial genomes of arthropods (except Hexapoda)
    Sterling-Montealegre, Ramiro Andres
    Prada, Carlos Fernando
    GENE, 2024, 892
  • [29] Mitochondrial gene order evolution in Mollusca: Inference of the ancestral state from the mtDNA of Chaetopleura apiculata (Polyplacophora, Chaetopleuridae)
    Guerra, Davide
    Bouvet, Karim
    Breton, Sophie
    MOLECULAR PHYLOGENETICS AND EVOLUTION, 2018, 120 : 233 - 239
  • [30] The complete chloroplast genomes of seventeen Aegilops tauschii: genome comparative analysis and phylogenetic inference
    Su, Qing
    Liu, Luxian
    Zhao, Mengyu
    Zhang, Cancan
    Zhang, Dale
    Li, Youyong
    Li, Suoping
    PEERJ, 2020, 8
12345