Comparison of the three-dimensional organization of sperm and fibroblast genomes using the Hi-C approach

被引：0
|
作者：
Nariman Battulin
Veniamin S Fishman
Alexander M Mazur
Mikhail Pomaznoy
Anna A Khabarova
Dmitry A Afonnikov
Egor B Prokhortchouk
Oleg L Serov
机构：
[1] Institute of Cytology and Genetics,Center ‘Bioengineering’
[2] Novosibirsk State University,National Research Center
[3] Russian Academy of Sciences,Skoltech Center for Stem Cell Research
[4] Kurchatov Institute,undefined
[5] Skolkovo Institute of Science and Technology,undefined
来源：
Genome Biology | / 16卷
关键词：
Embryonic Stem Cell; Sperm Cell; Contact Probability; Chromosome Territory; Maximal Information Coefficient;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [21] Hi-C chromosome conformation capture sequencing of avian genomes using the BGISEQ-500 platform
    Sandoval-Velasco, Marcela
    Antonio Rodriguez, Juan
    Estrada, Cynthia Perez
    Zhang, Guojie
    Aiden, Erez Lieberman
    Marti-Renom, Marc A.
    Gilbert, M. Thomas P.
    Smith, Oliver
    [J]. GIGASCIENCE, 2020, 9 (08):
  • [22] Chromosome3D: reconstructing three-dimensional chromosomal structures from Hi-C interaction frequency data using distance geometry simulated annealing
    Badri Adhikari
    Tuan Trieu
    Jianlin Cheng
    [J]. BMC Genomics, 17
  • [23] Hi-C analysis in patient-derived organoids reveals the impact of three-dimensional chromatin structures on pancreatic cancer transcriptional subtypes
    Kato, Hiroyuki
    Iwadate, Dosuke
    Yamamoto, Keisuke
    Fujiwara, Hiroaki
    Ijichi, Hideaki
    Fujishiro, Mitsuhiro
    Tateishi, Keisuke
    [J]. CANCER RESEARCH, 2022, 82 (22) : 47 - 48
  • [24] Chromosome3D: reconstructing three-dimensional chromosomal structures from Hi-C interaction frequency data using distance geometry simulated annealing
    Adhikari, Badri
    Tuan Trieu
    Cheng, Jianlin
    [J]. BMC GENOMICS, 2016, 17
  • [25] Three-Dimensional Organization of Polyribosomes-A Modern Approach
    Afonina, Z. A.
    Shirokov, V. A.
    [J]. BIOCHEMISTRY-MOSCOW, 2018, 83 : S48 - S55
  • [26] Three-dimensional sperm surface reconstruction: a novel approach to assessing sperm morphology
    Levine, Brian A.
    Feinstein, Jeremy
    Neri, Queenie V.
    Goldschlag, Dan
    Rosenwaks, Zcv
    Belongie, Serge
    Palermo, Gianpiero D.
    [J]. FERTILITY AND STERILITY, 2015, 104 (06) : E14 - E15
  • [27] Comparison of Hi-C results using in-solution versus in-nucleus ligation
    Nagano, Takashi
    Varnai, Csilla
    Schoenfelder, Stefan
    Javierre, Biola-Maria
    Wingett, Steven W.
    Fraser, Peter
    [J]. GENOME BIOLOGY, 2015, 16
  • [28] Comparison of Hi-C results using in-solution versus in-nucleus ligation
    Takashi Nagano
    Csilla Várnai
    Stefan Schoenfelder
    Biola-Maria Javierre
    Steven W. Wingett
    Peter Fraser
    [J]. Genome Biology, 16
  • [29] HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps
    Yuxuan Du
    Fengzhu Sun
    [J]. Genome Biology, 23
  • [30] HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps
    Du, Yuxuan
    Sun, Fengzhu
    [J]. GENOME BIOLOGY, 2022, 23 (01)
12345