Identification and Expression of the tig Gene Coding for Trigger Factor from Psychrophilic Bacteria with no Information of Genome Sequence Available

被引:0
|
作者
Kyunghee Lee
Hyojung Choi
Hana Im
机构
[1] Sejong University,Department of Chemistry
[2] Sejong University,Department of Molecular Biology
来源
Current Microbiology | 2009年 / 59卷
关键词
Cold Treatment; Trigger Factor; Psychrophilic Bacterium; PPIase Activity; Cloning Technology;
D O I
暂无
中图分类号
学科分类号
摘要
Trigger factor (TF) plays a key role as a molecular chaperone with a peptidyl-prolyl cis–trans isomerase (PPIase) activity by which cells promote folding of newly synthesized proteins coming out of ribosomes. Since psychrophilic bacteria grow at a quite low temperature, between 4 and 15°C, TF from such bacteria was investigated and compared with that of mesophilic bacteria E. coli in order to offer an explanation of cold-adaptation at a molecular level. Using a combination of gradient PCRs with homologous primers and LA PCR in vitro cloning technology, the tig gene was fully identified from Psychromonas arctica, whose genome sequence is not yet available. The resulting amino acid sequence of the TF was compared with other homologous TFs using sequence alignments to search for common domains. In addition, we have developed a protein expression system, by which TF proteins from P. arctica (PaTF) were produced by IPTG induction upon cloning the tig gene on expression vectors, such as pAED4. We have further examined the role of expressed psychrophilic PaTF on survival against cold treatment at 4°C. Finally, we have attempted the in vitro biochemical characterization of TF proteins with His-tags expressed in a pET system, such as the PPIase activity of PaTF protein. Our results demonstrate that the expressed PaTF proteins helped cells survive against cold environments in vivo and the purified PaTF in vitro display the functional PPIase activity in a concentration dependent manner.
引用
收藏
相关论文
共 50 条
  • [21] IdentiCS – Identification of coding sequence and in silico reconstruction of the metabolic network directly from unannotated low-coverage bacterial genome sequence
    Jibin Sun
    An-Ping Zeng
    BMC Bioinformatics, 5
  • [22] Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information
    Joung, Je-Gun
    Fei, Zhangjun
    BMC BIOINFORMATICS, 2009, 10
  • [23] Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information
    Je-Gun Joung
    Zhangjun Fei
    BMC Bioinformatics, 10
  • [24] Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize
    Hongyan Xing
    Ramesh N Pudake
    Ganggang Guo
    Guofang Xing
    Zhaorong Hu
    Yirong Zhang
    Qixin Sun
    Zhongfu Ni
    BMC Genomics, 12
  • [25] Genome-Wide Identification and Expression Profiling of the BZR Transcription Factor Gene Family in Nicotiana benthamiana
    Chen, Xuwei
    Wu, Xinyang
    Qiu, Shiyou
    Zheng, Hongying
    Lu, Yuwen
    Peng, Jiejun
    Wu, Guanwei
    Chen, Jianping
    Rao, Shaofei
    Yan, Fei
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2021, 22 (19)
  • [26] Genome-Wide Identification of ARF Transcription Factor Gene Family and Their Expression Analysis in Sweet Potato
    Pratt, Isaac Seth
    Zhang, Baohong
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2021, 22 (17)
  • [27] Genome-Wide Identification, Characterization, and Expression Profiling of the Legume BZR Transcription Factor Gene Family
    Li, Yueying
    He, Liangliang
    Li, Jing
    Chen, Jianghua
    Liu, Changning
    FRONTIERS IN PLANT SCIENCE, 2018, 9
  • [28] Genome-Wide Identification and Expression Analysis of Auxin Response Factor Gene Family in Linum usitatissimum
    Qi, Yanni
    Wang, Limin
    Li, Wenjuan
    Dang, Zhao
    Xie, Yaping
    Zhao, Wei
    Zhao, Lirong
    Li, Wen
    Yang, Chenxi
    Xu, Chenmeng
    Zhang, Jianping
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2023, 24 (13)
  • [29] Genome-wide identification of the ARF (auxin response factor) gene family in peach and their expression analysis
    Diao, Donghui
    Hu, Xiao
    Guan, Dan
    Wang, Wei
    Yang, Haiqing
    Liu, Yueping
    MOLECULAR BIOLOGY REPORTS, 2020, 47 (06) : 4331 - 4344
  • [30] Genome-wide identification of the ARF (auxin response factor) gene family in peach and their expression analysis
    Donghui Diao
    Xiao Hu
    Dan Guan
    Wei Wang
    Haiqing Yang
    Yueping Liu
    Molecular Biology Reports, 2020, 47 : 4331 - 4344