51V NMR chemical shifts calculated from QM/MM models of vanadium chloroperoxidase

被引:88
|
作者
Waller, Mark P. [1 ]
Buehl, Michael [1 ]
Geethalakshmi, K. R. [1 ]
Wang, Dongqi [1 ]
Thiel, Walter [1 ]
机构
[1] Max Planck Inst Kohlenforsch, D-45470 Mulheim, Germany
关键词
density functional calculations; haloperoxidase; NMR spectroscopy; vanadium;
D O I
10.1002/chem.200700295
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
V-51 NMR chemical shifts calculated from QM/MM-optimized (QM = quantum mechanical; MM = molecular mechanical) models of vanadium-dependent chloroperoxidase (VCPO) are presented. An extensive number of protonation states for the vanadium cofactor (active site of the protein) and a number of probable positional isomers for each of the protonation states are considered. The size of the QM region is increased incrementally to observe the convergence behavior of the V-51 NMR chemical shifts. A total of 40 models are assessed by comparison to experimental solid-state V-51 NMR results recently reported in the literature. Isotropic chemical shifts are found to be a poor indicator of the protonation state; however, anisotropic chemical shifts and the nuclear quadrupole tensors appear to be sensitive to changes in the proton environment of the vanadium nuclei. This detailed investigation of the V-51 NMR chemical shifts computed from QM/MM models provides further evidence that the ground state is either a triply protonated (one axial water and one equatorial hydroxyl group) or a doubly protonated vanadate moiety in VCPO. Particular attention is given to the electrostatic and geometric effects of the protein environment. This is the first study to compute anisotropic NMR chemical shifts from QM/MM models of an active metalloprotein for direct comparison with solid-state MAS NMR data. This theoretical approach enhances the potential use of experimental solid-state NMR spectroscopy for the structural determination of metalloproteins.
引用
下载
收藏
页码:4723 / 4732
页数:10
相关论文
共 50 条
  • [31] Small 51V chemical shift anisotropy for LaVO4 from MQMAS and MAS NMR spectroscopy
    Nielsen, UG
    Jakobsen, HJ
    Skibsted, J
    SOLID STATE NUCLEAR MAGNETIC RESONANCE, 2003, 23 (1-2) : 107 - 115
  • [32] 51V magic angle spinning NMR spectroscopy and quantum chemical calculations in vanadium bio-inorganic systems: current perspective
    Gupta, Rupal
    Yehl, Jenna
    Li, Mingyue
    Polenova, Tatyana
    CANADIAN JOURNAL OF CHEMISTRY, 2015, 93 (09) : 929 - 937
  • [33] NBO analysis of NMR chemical shifts in rhodopsin and bathorhodopsin using QM/MM hybrid methods
    Sproviero, EM
    Gascon, JA
    Batista, VS
    BIOPHYSICAL JOURNAL, 2005, 88 (01) : 512A - 512A
  • [34] Automated Fragmentation QM/MM Calculation of NMR Chemical Shifts for Protein-Ligand Complexes
    Jin, Xinsheng
    Zhu, Tong
    Zhang, John Z. H.
    He, Xiao
    FRONTIERS IN CHEMISTRY, 2018, 6
  • [35] 51V NMR Crystallography of Vanadium Chloroperoxidase and Its Directed Evolution P395D/L241V/T343A Mutant: Protonation Environments of the Active Site
    Gupta, Rupal
    Hou, Guangjin
    Renirie, Rokus
    Wever, Ron
    Polenova, Tatyana
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2015, 137 (16) : 5618 - 5628
  • [36] 51V chemical shielding and quadrupole coupling in ortho- and metavanadates from 51V MAS NR4R spectroscopy
    Skibsted, J
    Jacobsen, CJH
    Jakobsen, HJ
    INORGANIC CHEMISTRY, 1998, 37 (12) : 3083 - 3092
  • [37] A solid-state 51V NMR characterization of vanadium sites in LiCoxNi1-xVO4
    Stallworth, PE
    Guo, X
    Tatham, E
    Greenbaum, SG
    Arrabito, M
    Bodoarado, S
    Penazzi, N
    SOLID STATE IONICS, 2004, 170 (3-4) : 181 - 186
  • [38] 51V NMR and catalytic studies of vanadium-containing MCM-41 mesoporous molecular sieves
    Jablonska, H
    Wloch, E
    Olejniczak, Z
    Sulikowski, B
    XXXII POLISH SEMINAR ON NUCLEAR MAGNETIC RESONANCE AND ITS APPLICATIONS, PROCEEDINGS, 2000, 29 : 19 - 24
  • [39] 31P and 51V MAS-NMR Characterisation of Mixed Vanadium and Titanium Phosphates Prepared from Molecular Precursors
    S. A. Ennaciri
    C. R’kha
    P. Barboux
    J. Livage
    J. Maquet
    Journal of Sol-Gel Science and Technology, 2005, 34 : 197 - 203
  • [40] NMR chemical shifts in the low-pH form of α-chymotrypsin.: A QM/MM and ONIOM-NMR study
    Molina, PA
    Sikorski, RS
    Jensen, JH
    THEORETICAL CHEMISTRY ACCOUNTS, 2003, 109 (03) : 100 - 107