String pattern searching algorithm based on characters indices

被引:0
|
作者
Markic, Ivan [1 ]
Stula, Maja [2 ]
Zoric, Marija [2 ]
机构
[1] Cent Insurance Co Ltd, Mostar, Bosnia & Herceg
[2] Fac Elect Engn Mech Engn & Naval Architecture Spl, Dept Elect & Comp, Split, Croatia
关键词
string pattern matching; genome; DNA; biological data; exact string matching;
D O I
10.23919/splitech.2019.8783109
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
In this article we shortly present new string pattern matching algorithm. The algorithm uses novel technique for skipping unnecessary comparisons in pattern searching phase. The pattern searching is applied in almost all branches of science such as bioinformatics, information security, text mining, etc. In the context of continuous increase of data, efficient algorithms are necessary to ensure that one can find a pattern in a sequence in a fast and accurate manner. Pattern searching solves the problem of finding a pattern exhibiting certain properties within a given sequence of symbols. Concept of the new algorithm presented in this article is based on a character index in a pattern, aiming at, but not limited to patterns in DNA sequences.
引用
收藏
页码:100 / 103
页数:4
相关论文
共 50 条
  • [41] A CORRECT PREPROCESSING ALGORITHM FOR BOYER-MOORE STRING-SEARCHING
    RYTTER, W
    SIAM JOURNAL ON COMPUTING, 1980, 9 (03) : 509 - 512
  • [42] Efficient String Matching Algorithm for Searching Large DNA and Binary Texts
    Al-Ssulami, Abdulrakeeb M.
    Mathkour, Hassan
    Arafah, Mohammed Amer
    INTERNATIONAL JOURNAL ON SEMANTIC WEB AND INFORMATION SYSTEMS, 2017, 13 (04) : 198 - 220
  • [43] FASTPAT - A FAST AND EFFICIENT ALGORITHM FOR STRING SEARCHING IN DNA-SEQUENCES
    PRUNELLA, N
    LIUNI, S
    ATTIMONELLI, M
    PESOLE, G
    COMPUTER APPLICATIONS IN THE BIOSCIENCES, 1993, 9 (05): : 541 - 545
  • [44] A NEW PROOF OF THE LINEARITY OF THE BOYER-MOORE STRING SEARCHING ALGORITHM
    GUIBAS, LJ
    ODLYZKO, AM
    SIAM JOURNAL ON COMPUTING, 1980, 9 (04) : 672 - 682
  • [45] A fast searching algorithm of symmetrical period modulation pattern based on accumulative transformation technique
    Fan, FH
    Tan, Y
    ADVANCES IN NATURAL COMPUTATION, PT 2, PROCEEDINGS, 2005, 3611 : 493 - 500
  • [46] Searching BWT against Pattern Matching Machine to Find Multiple String Matches
    Chen, Yangjun
    Wu, Yujia
    2017 INTERNATIONAL CONFERENCE ON CYBER-ENABLED DISTRIBUTED COMPUTING AND KNOWLEDGE DISCOVERY (CYBERC), 2017, : 167 - 176
  • [47] A pre-processing algorithm for string pattern matching
    Boxer, L
    AMCS '05: Proceedings of the 2005 International Conference on Algorithmic Mathematics and Computer Science, 2005, : 29 - 32
  • [48] An improved multi-pattern string matching algorithm
    Dai, Liu-Ling
    Huang, He-Yan
    Chen, Zhao-Xiong
    Moshi Shibie yu Rengong Zhineng/Pattern Recognition and Artificial Intelligence, 2006, 19 (01): : 47 - 51
  • [49] A2KD STRING PATTERN MATCHING ALGORITHM
    Gupta, Aditi
    Jaiswal, Divyansh
    Sinha, Kartikeya
    Duggal, Aman
    2015 1ST INTERNATIONAL CONFERENCE ON NEXT GENERATION COMPUTING TECHNOLOGIES (NGCT), 2015, : 361 - 364
  • [50] Fast multiple pattern algorithm for Chinese string matching
    Shen, Zhou
    Wang, Yong-Cheng
    Xu, Yi-Zhen
    Shanghai Jiaotong Daxue Xuebao/Journal of Shanghai Jiaotong University, 2001, 35 (09): : 1285 - 1289