Identification of a selective G-quadruplex DNA binder using a multistep virtual screening approach

被引:22
|
作者
Hou, Jin-Qiang [1 ,2 ]
Chen, Shuo-Bin [1 ]
Zan, Li-Peng [1 ]
Ou, Tian-Miao [1 ]
Tan, Jia-Heng [1 ]
Luyt, Leonard G. [2 ,3 ]
Huang, Zhi-Shu [1 ]
机构
[1] Sun Yat Sen Univ, Sch Pharmaceut Sci, Guangzhou 510006, Guangdong, Peoples R China
[2] London Reg Canc Program, London, ON N6A 4L6, Canada
[3] Univ Western Ontario, Dept Oncol, Dept Chem, Dept Med Imaging, London, ON N6A 3K7, Canada
基金
美国国家科学基金会;
关键词
C-MYC; SMALL-MOLECULE; DERIVATIVES; BINDING; LIGANDS; STABILIZATION; TRANSCRIPTION; DISTAMYCIN; DISCOVERY; PROMOTER;
D O I
10.1039/c4cc06951j
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
To efficiently identify small molecules binding to a G-quadruplex structure while avoiding binding to duplex DNA, we performed a multistep structure-based virtual screening by simultaneously taking into account G-quadruplex DNA and duplex DNA. Among the 13 compounds selected, one outstanding ligand shows significant selectivity for G-quadruplex binding as determined using SPR, FRET-based competition and luciferase activity assay.
引用
收藏
页码:198 / 201
页数:4
相关论文
共 50 条
  • [21] Fluorescent-Ligand-Mediated Screening of G-Quadruplex Structures Using a DNA Microarray
    Iida, Keisuke
    Nakamura, Takahiro
    Yoshida, Wataru
    Tera, Masayuki
    Nakabayashi, Kazuhiko
    Hata, Kenichiro
    Ikebukuro, Kazunori
    Nagasawa, Kazuo
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2013, 52 (46) : 12052 - 12055
  • [22] Selective recognition of c-MYC G-quadruplex DNA using prolinamide derivatives
    Chauhan, Ajay
    Paladhi, Sushovan
    Debnath, Manish
    Dash, Jyotirmayee
    ORGANIC & BIOMOLECULAR CHEMISTRY, 2016, 14 (24) : 5761 - 5767
  • [23] A flavonol that acts as a potential DNA minor groove binder as also an efficient G-quadruplex loop binder
    Halder, Dipanjan
    Purkayastha, Pradipta
    JOURNAL OF MOLECULAR LIQUIDS, 2018, 265 : 69 - 76
  • [24] Simple and fast screening for structure-selective G-quadruplex ligands
    Hashimoto, Yoshiki
    Imagawa, Yoshiki
    Nagano, Kaho
    Maeda, Ryuichi
    Nagahama, Naho
    Torii, Takeru
    Kinoshita, Natsuki
    Takamiya, Nagisa
    Kawauchi, Keiko
    Tatesishi-Karimata, Hisae
    Sugimoto, Naoki
    Miyoshi, Daisuke
    CHEMICAL COMMUNICATIONS, 2023, 59 (33) : 4891 - 4894
  • [25] Ligands playing musical chairs with G-quadruplex DNA: A rapid and simple displacement assay for identifying selective G-quadruplex binders
    Monchaud, D.
    Allain, C.
    Bertrand, H.
    Smargiasso, N.
    Rosu, F.
    Gabelica, V.
    De Cian, A.
    Mergny, J. -L.
    Teulade-Fichou, M. -R
    BIOCHIMIE, 2008, 90 (08) : 1207 - 1223
  • [26] Ru-indoloquinoline complex as a selective and effective human telomeric G-quadruplex binder
    Yu, Hui-juan
    Zhao, Ying
    Mo, Wei-jie
    Hao, Zhi-feng
    Yu, Lin
    SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 2014, 132 : 84 - 90
  • [27] How to split a G-quadruplex for DNA detection: new insight into the formation of DNA split G-quadruplex
    Zhu, Jinbo
    Zhang, Libing
    Dong, Shaojun
    Wang, Erkang
    CHEMICAL SCIENCE, 2015, 6 (08) : 4822 - 4827
  • [28] Alkylating probes for the G-quadruplex structure and evaluation of the properties of the alkylated G-quadruplex DNA
    Sato, Norihiro
    Takahashi, Shuntaro
    Tateishi-Karimata, Hisae
    Hazemi, Madoka E.
    Chikuni, Tomoko
    Onizuka, Kazumitsu
    Sugimoto, Naoki
    Nagatsugi, Fumi
    ORGANIC & BIOMOLECULAR CHEMISTRY, 2018, 16 (09) : 1436 - 1441
  • [29] Selective binding of bifunctional Zn(II) complexes to G-quadruplex DNA
    Fountain, Matthew
    Morrow, Janet
    Siters, Kevin
    Shapovalova, Mariya
    Shively, Melissa
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2015, 249
  • [30] Selective G-Quadruplex DNA Recognition by a New Class of Designed Cyanines
    Nanjunda, Rupesh
    Owens, Eric A.
    Mickelson, Leah
    Dost, Tyler L.
    Stroeva, Ekaterina M.
    Huynh, Hang T.
    Germann, Markus W.
    Henary, Maged M.
    Wilson, W. David
    MOLECULES, 2013, 18 (11): : 13588 - 13607