MISA-web: a web server for microsatellite prediction

被引：1304
|
作者：
Beier, Sebastian [1 ]
Thiel, Thomas [2 ]
Muench, Thomas [1 ]
Scholz, Uwe [1 ]
Mascher, Martin [1 ,3 ]
机构：
[1] Leibniz Inst Plant Genet & Crop Plant Res IPK Gat, Corrensstr 3, D-06466 Seeland, Germany
[2] KWS Saat SE, Grimsehlstr 31, D-37555 Einbeck, Germany
[3] German Ctr Integrat Biodivers Res iDiv, Leipzig, Germany
来源：
BIOINFORMATICS | 2017年 / 33卷 / 16期
关键词：
TANDEM REPEATS; GENOME; SEQUENCES; MARKERS; SSR; DNA;
D O I：
10.1093/bioinformatics/btx198
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
Motivation: Microsatellites are a widely-used marker system in plant genetics and forensics. The development of reliable microsatellite markers from resequencing data is challenging. Results: We extended MISA, a computational tool assisting the development of microsatellite markers, and reimplemented it as a web-based application. We improved compound microsatellite detection and added the possibility to display and export MISA results in GFF3 format for downstream analysis. Availability and Implementation: MISA-web can be accessed under http://misaweb.ipk-gatersleben.de/. The website provides tutorials, usage note as well as download links to the source code.
引用
收藏
页码：2583 / 2585
页数：3
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