Landscape of somatic mutations in gastric cancer assessed using next-generation sequencing analysis

被引:20
|
作者
Pan, Xuan [1 ]
Ji, Xiaozhi [1 ,2 ]
Zhang, Renmin [1 ,2 ]
Zhou, Zhaofei [1 ]
Zhong, Yuejiao [1 ]
Peng, Wei [1 ]
Sun, Ning [1 ]
Xu, Xinyu [3 ]
Xia, Lei [3 ]
Li, Pansong [4 ]
Lu, Jianwei [1 ]
Tu, Jing [5 ]
机构
[1] Nanjing Med Univ, Affiliated Canc Hosp, Jiangsu Inst Canc Res, Dept Med Oncol,Jiangsu Canc Hosp, 42 Baiziting Rd, Nanjing 210009, Jiangsu, Peoples R China
[2] Xuzhou Med Univ, Xuzhou 221004, Jiangsu, Peoples R China
[3] Nanjing Med Univ, Affiliated Canc Hosp, Jiangsu Inst Canc Res, Dept Pathol,Jiangsu Canc Hosp, Nanjing 210009, Jiangsu, Peoples R China
[4] Geneplus Beijing Inst, Dept Res & Dev, Beijing 102206, Peoples R China
[5] Southeast Univ, Sch Biol Sci & Med Engn, State Key Lab Bioelect, 2 Sipailou, Nanjing 210096, Jiangsu, Peoples R China
基金
中国国家自然科学基金;
关键词
tumor protein p53 mutation; gastric cancer; somatic mutation; next-generation sequencing; sequencing; GENETIC-HETEROGENEITY; POINT MUTATIONS; MUTANT P53; ADENOCARCINOMA; HISTOLOGY; SURVIVAL; SUBTYPES; TP53;
D O I
10.3892/ol.2018.9314
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Gastric cancer is a highly heterogeneous disease and the second leading cause of cancer-associated mortality. However, the genomic basis of gastric cancer is not completely understood and the underlying genetic heterogeneity has not been well studied. In the present study, 1,021 genes were sequenced and the somatic mutations of 45 formalin-fixed, paraffin-embedded gastric adenocarcinoma samples were assessed using next-generation sequencing technologies. In the present study, a median sequencing coverage depth of 708-fold was achieved. Somatic genomic alterations were detected in 37/45 patients (82.4%) and the most frequent genetic alterations identified were tumor protein P53 (TP53) gene mutations. Mutations in MLL4, ERBB3, FBXW7, MLL3, MTOR, NOTCH1, PIK3CA, KRAS, ERBB4 and EGFR were also detected. Patients with TP53 mutations had a higher number of somatic mutations, and the total number of somatic mutations was weakly correlated with patient age. These results provided data on the intratumoral heterogeneity of gastric cancer and may be used in order to develop personalized cancer therapy.
引用
收藏
页码:4863 / 4870
页数:8
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