Photorhabdus heterorhabditis subsp. aluminescens subsp. nov., Photorhabdus heterorhabditis subsp. heterorhabditis subsp. nov., Photorhabdus australis subsp. thailandensis subsp. nov., Photorhabdus australis subsp. australis subsp. nov., and Photorhabdus aegyptia sp. nov. isolated from Heterorhabditis entomopathogenic nematodes

被引:24
|
作者
Machado, Ricardo A. R. [1 ]
Muller, Arthur [1 ]
Ghazal, Shimaa M. [2 ,3 ]
Thanwisai, Aunchalee [4 ]
Pages, Sylvie [5 ]
Bode, Helge B. [6 ,7 ,8 ]
Hussein, Mona A. [9 ]
Khalil, Kamal M. [3 ]
Tisa, Louis S. [10 ]
机构
[1] Univ Neuchatel, Inst Biol, Expt Biol Res Grp, Neuchatel, Switzerland
[2] Univ New Hampshire, Dept Biol Sci, Durham, NH 03824 USA
[3] Natl Res Ctr, Genet & Cytol Dept, Genet Engn & Biotechnol Div, Cairo, Egypt
[4] Naresuan Univ, Fac Med Sci, Dept Microbiol & Parasitol, Phitsanulok, Thailand
[5] Univ Montpellier, INRAe, UMR1333, DGIMI, F-34095 Montpellier 05, France
[6] Goethe Univ Frankfurt Main, Fachbereich Biowissensch, Mol Biotechnol, Frankfurt, Germany
[7] Goethe Univ Frankfurt Main, Buchmann Inst Mol Life Sci BMLS, Frankfurt, Germany
[8] Senckenberg Gesell Nat Forsch, Frankfurt, Germany
[9] Natl Res Ctr, Dept Pests & Plant Protect, Agr & Biol Div, Cairo, Egypt
[10] Univ New Hampshire, Dept Mol Cellular & Biomed Sci, Durham, NH 03824 USA
基金
瑞士国家科学基金会;
关键词
dDDH; Heterorhabditis; Photorhabdus; polyphasic classification; whole genome sequencing; GENUS PHOTORHABDUS; XENORHABDUS-LUMINESCENS; DNA RELATEDNESS; PROPOSAL; ENTEROBACTERIACEAE; THRACENSIS; PHYLOGENY; SYMBIONT; BACTERIA; TAXONOMY;
D O I
10.1099/ijsem.0.004610
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Three Gram-stain-negative, rod-shaped, non-spore-forming bacteria, BA1T, Q614T and PB68.1T, isolated from the digestive system of Heterorhabditis entomopathogenic nematodes, were biochemically and molecularly characterized to clarify their taxonomic affiliations. The 16S rRNA gene sequences of these strains suggest that they belong to the Gammaproteobacteria, to the family Morganellacea, and to the genus Photorhabdus. Deeper analyses using whole genome- based phylogenetic reconstructions suggest that BA1T is closely related to Photorhabdus akhursti, that Q614T is closely related to Photorhabdus heterorhabditis, and that PB68.1T is closely related to Photorhabdus australis. In silico genomic comparisons confirm these observations: BA1T and P. akhursti 15138T share 68.8 % digital DNA?DNA hybridization (dDDH), Q614T and P. heterorhabditis SF41T share 75.4 % dDDH, and PB68.1T and P. australis DSM 17609T share 76.6 % dDDH. Physiological and biochemical characterizations reveal that these three strains also differ from all validly described Photorhabdus species and from their more closely related taxa, contrary to what was previously suggested. We therefore propose to classify BA1T as a new species within the genus Photorhabdus, Q614T as a new subspecies within P. heterorhabditis, and PB68.1T as a new subspecies within P. australis. Hence, the following names are proposed for these strains: Photorhabdus aegyptia sp. nov. with the type strain BA1T(=DSM 111180T=CCOS 1943T=LMG 31957T), Photorhabdus heterorhabditis subsp. aluminescens subsp. nov. with the type strain Q614T (=DSM 111144T=CCOS 1944T=LMG 31959T) and Photorhabdus australis subsp. thailandensis subsp. nov. with the type strain PB68.1T (=DSM 111145T=CCOS 1942T). These propositions automatically create Photorhabdus heterorhabditis subsp. heterorhabditis subsp. nov. with SF41T as the type strain (currently classified as P. heterorhabditis) and Photorhabdus australis subsp. australis subsp. nov. with DSM17609T as the type strain (currently classified as P. australis).
引用
收藏
页码:1 / 9
页数:9
相关论文
共 50 条
  • [1] Photorhabdus hindustanensis sp. nov., Photorhabdus akhurstii subsp. akhurstii subsp. nov., and Photorhabdus akhurstii subsp. bharatensis subsp. nov., isolated from Heterorhabditis entomopathogenic nematodes
    Machado, Ricardo A. R.
    Somvanshi, Vishal S.
    Muller, Arthur
    Kushwah, Jyoti
    Bhat, Chaitra G.
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2021, 71 (09)
  • [2] Photorhabdus khanii subsp. guanajuatensis subsp. nov., isolated from Heterorhabditis atacamensis, and Photorhabdus luminescens subsp. mexicana subsp. nov., isolated from Heterorhabditis mexicana entomopathogenic nematodes
    Machado, Ricardo A. R.
    Bruno, Pamela
    Arce, Carla C. M.
    Liechti, Nicole
    Koehler, Angela
    Bernal, Julio
    Bruggmann, Remy
    Turlings, Ted C. J.
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2019, 69 (03) : 652 - 661
  • [3] Photorhabdus aballayi sp. nov. and Photorhabdus luminescens subsp. venezuelensis subsp. nov., isolated from Heterorhabditis amazonensis entomopathogenic nematodes
    Machado, Ricardo A. R.
    Bhat, Aashaq Hussain
    Castaneda-Alvarez, Carlos
    Puza, Vladimir
    San-Blas, Ernesto
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2023, 73 (05)
  • [4] Photorhabdus luminescens subsp. kleinii subsp. nov. (Enterobacteriales: Enterobacteriaceae)
    An, Ruisheng
    Grewal, Parwinder S.
    [J]. CURRENT MICROBIOLOGY, 2011, 62 (02) : 539 - 543
  • [5] Photorhabdus luminescens subsp. kleinii subsp. nov. (Enterobacteriales: Enterobacteriaceae)
    Ruisheng An
    Parwinder S. Grewal
    [J]. Current Microbiology, 2011, 62 : 539 - 543
  • [6] Photorhabdus temperata subsp. stackebrandtii subsp. nov. (Enterobacteriales: Enterobacteriaceae)
    Ruisheng An
    Parwinder S. Grewal
    [J]. Current Microbiology, 2010, 61 : 291 - 297
  • [7] Erratum to: Photorhabdus luminescens subsp. kleinii subsp. nov. (Enterobacteriales: Enterobacteriaceae)
    Ruisheng An
    Parwinder S. Grewal
    [J]. Current Microbiology, 2011, 62 : 1347 - 1347
  • [8] Phylogenomic analysis of the genus Rosenbergiella and description of Rosenbergiella gaditana sp. nov., Rosenbergiella metrosideri sp. nov., Rosenbergiella epipactidis subsp. epipactidis subsp. nov., Rosenbergiella epipactidis subsp. californiensis subsp. nov., Rosenbergiella epipactidis subsp. japonicus subsp. nov., Rosenbergiella nectarea subsp. nectarea subsp. nov. and Rosenbergiella nectarea subsp. apis subsp. nov., isolated from floral nectar and insects
    Alvarez-Perez, Sergio
    De Vega, Clara
    Vanoirbeek, Kristof
    Tsuji, Kaoru
    Jacquemyn, Hans
    Fukami, Tadashi
    Michiels, Chris
    Lievens, Bart
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2023, 73 (03)
  • [9] Emended Descriptions of Advenella kashmirensis subsp. kashmirensis subsp. nov., Advenella kashmirensis subsp. methylica subsp. nov., and Methylopila turkiensis sp. nov.
    M. N. Shmareva
    N. V. Agafonova
    E. N. Kaparullina
    N. V. Doronina
    Yu. A. Trotsenko
    [J]. Microbiology, 2016, 85 : 646 - 648
  • [10] Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov
    Rodrigues, Carla
    Passet, Virginie
    Rakotondrasoa, Andriniaina
    Diallo, Thierno Abdoulaye
    Criscuolo, Alexis
    Brisse, Sylvain
    [J]. RESEARCH IN MICROBIOLOGY, 2019, 170 (03) : 165 - 170