An Open-source Azure Solution for Scalable Genomics Workflows

被引：1

作者：

Yang-Turner, Fan ^{[1
]}

Gripper, Lawrence ^{[2
]}

Swann, Jeremy ^{[1
]}

Do, Trien ^{[1
]}

Foster, Dona ^{[1
]}

Volk, Denis ^{[1
]}

Ramanan, Anita ^{[2
]}

Robinson, Marcus ^{[2
]}

Peto, Tim ^{[1
]}

Crook, Derrick ^{[1
]}

机构：

[1] Univ Oxford, Nuffield Dept Clin Med, Oxford, England

[2] Microsoft CSE, London, England

来源：

2018 IEEE WORLD CONGRESS ON SERVICES (IEEE SERVICES 2018) | 2018年

关键词：

scientific workflow; container; cluster system; genomic data analytics; bioinformatic pipeline; cloud computing;

D O I：

10.1109/SERVICES.2018.00033

中图分类号：

TP [自动化技术、计算机技术];

学科分类号：

0812 ;

摘要：

We present an open-source Azure solution for running scalable genomics workflows. It benefits from state-of-art distributed workflow framework, container and cloud technologies and allows users to create a cluster that is scaled to suit their workload in minutes. We describe the design decisions, solution testing and automation options to support a variety of users for their genomic data analytics. The solution demonstrates a generic and customizable approach to run genomic data analytics workflows on a cloud environment

引用

页码：39 / 40

页数：2

共 50 条

[41] QUIMBY: An Innovative Open-Source Solution for e-Democracy
Miori, Vittorio
Russo, Dario
[J]. 9TH EUROPEAN CONFERENCE ON E-GOVERNMENT, PROCEEDINGS, 2009, : 493 - 500
[42] An open-source solution to performance portability for Summit and Sierra supercomputers
Bercea, G.T.
Bataev, A.
Eichenberger, A.E.
Bertolli, C.
Obrien, J.K.
[J]. IBM Journal of Research and Development, 2020, 64 (3-4):
[43] Open-source web tools for modeling and design tracking: Workflows facilitating collaborative drug discovery
Lexa, Katrina
Feng, Jianwen
[J]. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2018, 255
[44] OPEN-SOURCE HINDUISM
Siddhartha
[J]. TRAVERSING THE HEART: JOURNEYS OF THE INTER-RELIGIOUS IMAGINATION, 2010, 2 : 35 - 42
[45] Open-Source Voting
Anderson, Mark
[J]. IEEE SPECTRUM, 2008, 45 (10) : 9 - 10
[46] Open-source hardware
Davidson, S
[J]. IEEE DESIGN & TEST OF COMPUTERS, 2004, 21 (05): : 456 - 456
[47] An open-source universey
Singh, Ritesh
Duhaime, Douglas
[J]. ASTRONOMY & GEOPHYSICS, 2020, 61 (04) : 42 - 42
[48] Open-source globalization
Wittig, Christof
[J]. DR DOBBS JOURNAL, 2007, 32 (04): : 10 - 10
[49] Open-source biology
[J]. Nature, 2004, 431 : 491 - 491
[50] Open-Source Colorimeter
Anzalone, Gerald C.
Glover, Alexandra G.
Pearce, Joshua M.
[J]. SENSORS, 2013, 13 (04): : 5338 - 5346

← 1 2 3 4 5 →