Interactions between metal binding viral proteins and human targets as revealed by network-based bioinformatics

被引:23
|
作者
Chasapis, Christos T. [1 ]
机构
[1] Fdn Res & Technol Hellas, FORTH ICE HT, Inst Chem Engn Sci, Patras, Greece
关键词
Metalloproteins; Metal homeostasis; Virus-host interaction; PPI network; Random walk algorithm; 3; DOMAINS; VIRUS; DATABASE; IONS;
D O I
10.1016/j.jinorgbio.2018.06.012
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The role of metal ions in virus-host interactions is largely unknown. In the present computational study, the putative zinc, manganese, magnesium, and iron metalloproteomes of 226 different viruses were identified and then the human proteins interacting the viral metalloproteomes were retrieved through network-based bioinformatics. Protein features such as abundance, function and structurally disorder were classified according to the metal type bound to viral proteins. Likely perturbations of host cellular metal homeostasis by viral metal binders are also discussed. Furthermore, possible molecular linkage between the human proteome infected by viral metalloproteins with twelve neurological disorders was examined by in silico gene network analysis.
引用
收藏
页码:157 / 161
页数:5
相关论文
共 50 条
  • [11] Network-Based Multimodal Human-Robot Interactions in Ubiquitous Computing Environment
    Luo, R. C.
    Zhan, J. W.
    Cheng, W. H.
    Chang, N. W.
    2008 IEEE INTERNATIONAL CONFERENCE ON ROBOTICS AND BIOMIMETICS, VOLS 1-4, 2009, : 131 - +
  • [12] A comprehensive identification of potential molecular targets and small drugs candidate for melanoma cancer using bioinformatics and network-based screening approach
    Khan, Dhrubo Ahmed
    Adhikary, Tonmoy
    Sultana, Mst. Tania
    Toukir, Imran Ahamed
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2024, 42 (14): : 7349 - 7369
  • [13] Pharmacological targets and validation of remdesivir for the treatment of COVID-19-associated pulmonary fibrosis: A network-based pharmacology and bioinformatics study
    Zhao, Xueping
    Yang, Liping
    MEDICINE, 2024, 103 (39)
  • [14] Network of Interactions between ZIKA Virus Non-Structural Proteins and Human Host Proteins
    Golubeva, Volha A.
    Nepomuceno, Thales C.
    de Gregoriis, Giuliana
    Mesquita, Rafael D.
    Li, Xueli
    Dash, Sweta
    Garcez, Patricia P.
    Suarez-Kurtz, Guilherme
    Izumi, Victoria
    Koomen, John
    Carvalho, Marcelo A.
    Monteiro, Alvaro N. A.
    CELLS, 2020, 9 (01)
  • [15] Cost function network-based design of protein-protein interactions: predicting changes in binding affinity
    Viricel, Clement
    de Givry, Simon
    Schiex, Thomas
    Barbe, Sophie
    BIOINFORMATICS, 2018, 34 (15) : 2581 - 2589
  • [16] Network-based assessment of the selectivity of metabolic drug targets in Plasmodium falciparum with respect to human liver metabolism
    Bazzani, Susanna
    Hoppe, Andreas
    Holzhuetter, Hermann-Georg
    BMC SYSTEMS BIOLOGY, 2012, 6
  • [17] Adaptive Neural Network-based Perception and Awareness of Teleoperation Systems in Human-Machine Interactions
    Kebria, Parham M.
    Nahavandi, Darius
    Khosravi, Abbas
    Nahavandi, Saeid
    Bello, Fernando
    PROCEEDINGS OF THE 2020 IEEE INTERNATIONAL CONFERENCE ON HUMAN-MACHINE SYSTEMS (ICHMS), 2020, : 178 - 183
  • [18] Network-based analysis on the genes and their interactions reveals link between schizophrenia and Alzheimer's disease
    Guo, Pan
    Meng, Chao
    Zhang, Shuyue
    Cai, Yingzi
    Huang, Junkai
    Shu, Jianbo
    Wang, Ju
    Cai, Chunquan
    NEUROPHARMACOLOGY, 2024, 244
  • [19] Shared interactions of six neurotropic viruses with 38 human proteins: a computational and literature-based exploration of viral interactions and hijacking of human proteins in neuropsychiatric disorders
    Ozer, Elif Asli
    Keskin, Aleyna
    Berrak, Yusuf Huseyin
    Cankara, Fatma
    Can, Fusun
    Gursoy-Ozdemir, Yasemin
    Keskin, Ozlem
    Gursoy, Attila
    Yapici-Eser, Hale
    DISCOVER MENTAL HEALTH, 2025, 5 (01):
  • [20] SARS-CoV-2 potential drugs, drug targets, and biomarkers: a viral-host interaction network-based analysis
    Asmaa Samy
    Mohamed A. Maher
    Nehal Adel Abdelsalam
    Eman Badr
    Scientific Reports, 12