Interactions between metal binding viral proteins and human targets as revealed by network-based bioinformatics

被引:23
|
作者
Chasapis, Christos T. [1 ]
机构
[1] Fdn Res & Technol Hellas, FORTH ICE HT, Inst Chem Engn Sci, Patras, Greece
关键词
Metalloproteins; Metal homeostasis; Virus-host interaction; PPI network; Random walk algorithm; 3; DOMAINS; VIRUS; DATABASE; IONS;
D O I
10.1016/j.jinorgbio.2018.06.012
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The role of metal ions in virus-host interactions is largely unknown. In the present computational study, the putative zinc, manganese, magnesium, and iron metalloproteomes of 226 different viruses were identified and then the human proteins interacting the viral metalloproteomes were retrieved through network-based bioinformatics. Protein features such as abundance, function and structurally disorder were classified according to the metal type bound to viral proteins. Likely perturbations of host cellular metal homeostasis by viral metal binders are also discussed. Furthermore, possible molecular linkage between the human proteome infected by viral metalloproteins with twelve neurological disorders was examined by in silico gene network analysis.
引用
收藏
页码:157 / 161
页数:5
相关论文
共 50 条
  • [1] A network-based analysis of polyanion-binding proteins utilizing human protein arrays
    Salamat-Miller, Nazila
    Fang, Jianwen
    Seidel, Christopher W.
    Assenov, Yassen
    Albrecht, Mario
    Middaugh, C. Russell
    JOURNAL OF BIOLOGICAL CHEMISTRY, 2007, 282 (14) : 10153 - 10163
  • [2] Detection of multiple network-based allosteric interactions between peptides and arrays of DNA binding sites
    Kao, Karen K. L.
    Huang, Jonathan C. T.
    Yang, Chi-Kai
    Jeng, Kee-Ching G.
    Chang, Jung-Cheng
    Yao, Wen-Chen
    Hsien, S. C.
    Waring, Michael J.
    Chen, Ming-Hua
    Ma, Lin
    Sheh, Leung
    BIOORGANIC & MEDICINAL CHEMISTRY, 2010, 18 (01) : 366 - 376
  • [3] sNebula, a network-based algorithm to predict binding between human leukocyte antigens and peptides
    Heng Luo
    Hao Ye
    Hui Wen Ng
    Sugunadevi Sakkiah
    Donna L. Mendrick
    Huixiao Hong
    Scientific Reports, 6
  • [4] sNebula, a network-based algorithm to predict binding between human leukocyte antigens and peptides
    Luo, Heng
    Ye, Hao
    Ng, Hui Wen
    Sakkiah, Sugunadevi
    Mendrick, Donna L.
    Hong, Huixiao
    SCIENTIFIC REPORTS, 2016, 6
  • [5] Bioinformatics and network-based screening and discovery of potential molecular targets and small molecular drugs for breast cancer
    Alam, Md Shahin
    Sultana, Adiba
    Sun, Hongyang
    Wu, Jin
    Guo, Fanfan
    Li, Qing
    Ren, Haigang
    Hao, Zongbing
    Zhang, Yi
    Wang, Guanghui
    FRONTIERS IN PHARMACOLOGY, 2022, 13
  • [6] Network-based analysis revealed significant interactions between risk genes of severe COVID-19 and host genes interacted with SARS-CoV-2 proteins
    Qi, Hao-Xiang
    Shen, Qi-Dong
    Zhao, Hong-Yi
    Qi, Guo-Zhen
    Gao, Lei
    BRIEFINGS IN BIOINFORMATICS, 2022, 23 (01)
  • [7] Drug Target Interplay: A Network-based Analysis of Human Diseases and the Drug Targets
    Jain, Bhushan
    Raj, Utkarsh
    Varadwaj, Pritish Kumar
    CURRENT TOPICS IN MEDICINAL CHEMISTRY, 2018, 18 (13) : 1053 - 1061
  • [8] A network-based analysis of polyanion-binding proteins utilizing yeast protein arrays
    Salamat-Miller, Nazila
    Fang, Jianwen
    Seidel, Christopher W.
    Smalter, Aaron M.
    Assenov, Yassen
    Albrecht, Mario
    Middaugh, C. Russell
    MOLECULAR & CELLULAR PROTEOMICS, 2006, 5 (12) : 2263 - 2278
  • [9] Identification of molecular targets and small drug candidates for Huntington's disease via bioinformatics and a network-based screening approach
    Hossain, Md Ridoy
    Tareq, Md. Mohaimenul Islam
    Biswas, Partha
    Tauhida, Sadia Jannat
    Bibi, Shabana
    Zilani, Md. Nazmul Hasan
    Albadrani, Ghadeer M.
    Al-Ghadi, Muath Q.
    Abdel-Daim, Mohamed M.
    Hasan, Md. Nazmul
    JOURNAL OF CELLULAR AND MOLECULAR MEDICINE, 2024, 28 (16)
  • [10] Immunomodulatory effects of microbiota-derived metabolites at the crossroad of neurodegenerative diseases and viral infection: network-based bioinformatics insights
    Onisiforou, Anna
    Spyrou, George M.
    FRONTIERS IN IMMUNOLOGY, 2022, 13