Deterministic and stochastic P systems for modelling cellular processes

被引：15
|
作者：
Gheorghe, Marian [1 ]
Manca, Vincenzo [2 ]
Romero-Campero, Francisco J. [3 ]
机构：
[1] Univ Sheffield, Dept Comp Sci, Sheffield S1 4DP, S Yorkshire, England
[2] Univ Verona, Dept Comp Sci, I-37134 Verona, Italy
[3] Univ Nottingham, Sch Comp Sci, Nottingham NG8 1BB, England
来源：
NATURAL COMPUTING | 2010年 / 9卷 / 02期
基金：
英国工程与自然科学研究理事会; 英国生物技术与生命科学研究理事会;
关键词：
Membrane computing; P systems; Modelling; Systems biology; Synthetic biology;
D O I：
10.1007/s11047-009-9158-4
中图分类号：
TP18 [人工智能理论];
学科分类号：
081104 ; 0812 ; 0835 ; 1405 ;
摘要：
This paper presents two approaches based on metabolic and stochastic P systems, together with their associated analysis methods, for modelling biological systems and illustrates their use through two case studies.
引用
收藏
页码：457 / 473
页数：17
相关论文
共 50 条
  • [41] Modelling Curvature Effects Using L-Systems: From Discrete and Deterministic to Continuous and Stochastic
    Pulwicki, Julia
    Godin, Christophe
    THEORY AND PRACTICE OF NATURAL COMPUTING, TPNC 2017, 2017, 10687 : 49 - 60
  • [42] Stochastic Processes in Q(p) Associated with Systems of Nonlinear PIDEs
    Albeverio, Sergio
    Belopolskaya, Yana
    P-ADIC NUMBERS ULTRAMETRIC ANALYSIS AND APPLICATIONS, 2009, 1 (02) : 105 - 117
  • [43] Stochastic P systems and the simulation of biochemical processes with dynamic compartments
    Spicher, Antoine
    Michel, Olivier
    Cieslak, Mikolaj
    Giavitto, Jean-Louis
    Prusinkiewicz, Przemyslaw
    BIOSYSTEMS, 2008, 91 (03) : 458 - 472
  • [44] Stochastic and Deterministic Assembly Processes in Seamount Microbial Communities
    Li, Haizhou
    Zhou, Huaiyang
    Yang, Shanshan
    Dai, Xin
    APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2023, 89 (07)
  • [45] Stochastic and deterministic assembly processes in subsurface microbial communities
    Stegen, James C.
    Lin, Xueju
    Konopka, Allan E.
    Fredrickson, James K.
    ISME JOURNAL, 2012, 6 (09): : 1653 - 1664
  • [46] Stochastic and deterministic domino processes in photoinduced structural changes
    Koshino, K
    Ogawa, T
    JOURNAL OF PHYSICS AND CHEMISTRY OF SOLIDS, 1999, 60 (12) : 1915 - 1919
  • [47] Stochastic semantics for Communicating Piecewise Deterministic Markov Processes
    Strubbe, Stefan
    van der Schaft, Arjan
    2005 44th IEEE Conference on Decision and Control & European Control Conference, Vols 1-8, 2005, : 6103 - 6108
  • [48] Stochastic and deterministic assembly processes in subsurface microbial communities
    James C Stegen
    Xueju Lin
    Allan E Konopka
    James K Fredrickson
    The ISME Journal, 2012, 6 : 1653 - 1664
  • [49] STOCHASTIC-PROCESSES ORIGINATING IN DETERMINISTIC MICROSCOPIC DYNAMICS
    DURR, D
    GOLDSTEIN, S
    LEBOWITZ, JL
    JOURNAL OF STATISTICAL PHYSICS, 1983, 30 (02) : 519 - 526
  • [50] STOCHASTIC VERSUS DETERMINISTIC NONLINEAR GROWTH-PROCESSES
    ROEHNER, B
    INTERNATIONAL JOURNAL OF SYSTEMS SCIENCE, 1986, 17 (08) : 1153 - 1162
12345