Updates to the Symbol Nomenclature for Glycans guidelines

被引：316

作者：

Neelamegham, Sriram ^{[1
]}

Aoki-Kinoshita, Kiyoko ^{[2
]}

Bolton, Evan ^{[3
]}

Frank, Martin ^{[4
]}

Lisacek, Frederique ^{[5
,6
]}

Luetteke, Thomas ^{[7
]}

O'Boyle, Noel ^{[8
]}

Packer, Nicolle H. ^{[9
]}

Stanley, Pamela ^{[10
]}

Toukach, Philip ^{[11
]}

Varki, Ajit ^{[12
]}

Woods, Robert J. ^{[13
]}

Darvill, Alan ^{[14
]}

Dell, Anne ^{[15
]}

Henrissat, Bernard ^{[16
]}

Bertozzi, Carolyn ^{[17
]}

Hart, Gerald ^{[14
]}

Narimatsu, Hisashi ^{[18
]}

Freeze, Hudson ^{[19
]}

Yamada, Issaku ^{[20
]}

Paulson, James ^{[21
]}

Prestegard, James ^{[14
]}

Marth, Jamey ^{[22
]}

Vliegenthart, J. F. G. ^{[23
]}

Etzler, Marilynn ^{[24
]}

Aebi, Markus ^{[25
]}

Kanehisa, Minoru ^{[26
]}

Taniguchi, Naoyuki ^{[27
]}

Edwards, Nathan ^{[28
]}

Rudd, Pauline ^{[29
]}

Seeberger, Peter ^{[30
]}

Mazumder, Raja ^{[31
]}

Ranzinger, Rene ^{[14
]}

Cummings, Richard ^{[32
]}

Schnaar, Ronald ^{[33
]}

Perez, Serge ^{[34
]}

Kornfeld, Stuart ^{[35
]}

Kinoshita, Taroh ^{[36
]}

York, William ^{[14
]}

Knirel, Yuriy ^{[37
]}

机构：

[1] SUNY Buffalo, Dept Chem & Biol Engn & Med, 906 Furnas Hall, Buffalo, NY 14260 USA

[2] Soka Univ, Fac Sci & Engn, Glycan & Life Syst Integrat Ctr GaLSIC, 1-236 Tangi Machi, Hachioji, Tokyo 1928577, Japan

[3] Natl Lib Med, 8600 Rockville Pike,Bldg 38A,Room 8S810, Bethesda, MD 20896 USA

[4] Biognos AB, Generatorsgatan 1 Box 8963, S-40274 Gothenburg, Sweden

[5] Univ Geneva, Dept Comp Sci, SIB, Proteome Informat Grp, Route Drize 7, CH-1227 Geneva, Switzerland

[6] Univ Geneva, Biol Sect, Geneva, Switzerland

[7] GIP GmbH, Strahlenberger Str 112, D-63067 Offenbach, Germany

[8] NextMove Software, Innovat Ctr, Cambridge Sci Pk,Milton Rd, Cambridge CB4 0EY, England

[9] Macquarie Univ, Dept Mol Sci, Fac Sci & Engn, Rm 307,Bldg E8C, Sydney, NSW 2109, Australia

[10] Albert Einstein Coll Med, Dept Cell Biol, 1300 Morris Pk Ave, New York, NY 10461 USA

[11] Russian Acad Sci, Zelinsky Inst Organ Chem, Lab Carbohydrate Chem, Leninsky Prospect 47, Moscow 119991, Russia

[12] Univ Calif San Diego, Glycobiol Res & Training Ctr, La Jolla, CA 92093 USA

[13] Univ Georgia, Complex Carbohydrate Res Ctr, 315 Riverbend Rd, Athens, GA 30602 USA

[14] Univ Georgia, Athens, GA 30602 USA

[15] Imperial Coll London, London, England

[16] CNRS, Paris, France

[17] Stanford Univ, Stanford, CA 94305 USA

[18] Res Ctr Med Glycosci, Tokyo, Japan

[19] Sanford Burnham Prebys Res Inst, San Diego, CA USA

[20] Noguchi Inst, Tokyo, Japan

[21] Scripps Res Inst, La Jolla, CA 92037 USA

[22] Univ Calif Santa Barbara, Santa Barbara, CA 93106 USA

[23] Bijvoet Ctr, Utrecht, Netherlands

[24] Univ Calif Davis, Davis, CA USA

[25] Swiss Fed Inst Technol, Zurich, Switzerland

[26] Kyoto Univ, Kyoto, Japan

[27] RIKEN, Global Res Cluster, Wako, Saitama, Japan

[28] Georgetown Univ, Washington, DC 20057 USA

[29] Natl Inst Bioproc Res & Training, Cambridge, England

[30] Max Planck Inst Colloids & Interfaces, Potsdam, Germany

[31] George Washington Univ, Washington, DC 20052 USA

[32] Harvard Med Sch, Boston, MA 02115 USA

[33] Johns Hopkins Univ, Sch Med, Baltimore, MD 21218 USA

[34] French Natl Ctr Sci Res, Paris, France

[35] Washington Univ, St Louis, MO 63110 USA

[36] Osaka Univ, Suita, Osaka, Japan

[37] Russian Acad Sci, Moscow, Russia

来源：

GLYCOBIOLOGY | 2019年 / 29卷 / 09期

基金：

美国国家卫生研究院; 俄罗斯科学基金会; 日本科学技术振兴机构; 瑞士国家科学基金会;

关键词：

database; glycobiology; glycoscience; software; symbol nomenclature; IMPLEMENTATION; POLYSACCHARIDE;

D O I：

10.1093/glycob/cwz045

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The Symbol Nomenclature for Glycans (SNFG) is a community-curated standard for the depiction of monosaccharides and complex glycans using various colored-coded, geometric shapes, along with defined text additions. It is hosted by the National Center for Biotechnology Information (NCBI) at the NCBI-Glycans Page (www.ncbi.nlm.nih.gov/glycans/snfg.html). Several changes have been made to the SNFG page in the past year to update the rules for depicting glycans using the SNFG, to include more examples of use, particularly for non-mammalian organisms, and to provide guidelines for the depiction of ambiguous glycan structures. This Glycoforum article summarizes these recent changes.

引用

页码：620 / 624

页数：5

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