Transcriptomic analyses reveal highly conserved plant amalgavirus genomes in different species of Allium

被引：1

作者：

Cruz Macedo dos Santos, Jose Ailton ^{[1
]}

Freire Silva, Adriano Marcio ^{[2
]}

Polimeni de Mesquita, Julio Carlos ^{[3
]}

Blawid, Rosana ^{[1
]}

机构：

[1] Rural Fed Univ Pernambuco, Dept Agron, BR-52171900 Recife, PE, Brazil

[2] Univ Fed Alagoas, Maceio, Alagoas, Brazil

[3] Agron Inst Pernambuco IPA, Recife, PE, Brazil

来源：

ACTA VIROLOGICA | 2022年 / 66卷 / 01期

关键词：

amalgaviruses; Allium transcriptomic datasets; Allium sp; DEPENDENT RNA-POLYMERASES; SEQUENCE; VIRUS; IDENTIFICATION; PERFORMANCE;

D O I：

10.4149/av_2022_102

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

This work aims to study amalgavirus diversity in different species of allium collected around the world. Transcriptomic data of 19 Sequence Read Archive runs available at GenBank, as well as RNA-seq data generated from onion tissue from fields in Brazil were used to assemble nine allium cepa amalgavirus 1 (AcAV-1) and nine allium cepa amalgavirus 2 (AcAV-2) genomes from different species of allium worldwide. Sequence demarcation tool analyses of RdRp amino acid sequences revealed identities above 99% within each species, except for an isolate of AcAV-1 from Allium escalonicum from China. This work contributes to the understanding of the genetic diversity of amalgaviruses that infect the genus Allium.

引用

页码：11 / 17

页数：7

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