We determined the delta(13)C and delta(15)N of water-column particulate organic matter (POM), dissolved inorganic carbon, and nitrate, together with water chemistry and phytoplankton biomass and species composition every month in eutrophic Lake Lugano. As primary productivity increased during spring, the delta(13)C of photic-zone POM increased from -34parts per thousand to -24parts per thousand. This C-13 enrichment reflects decreasing C-isotope fractionation between organic and inorganic carbon pools in response to decreasing surface water [CO2(aq)]. Variations in the delta(15)N of surface-water POM (+2parts per thousand to +8parts per thousand) collected during the productive period were attributed to isotope effects associated with nitrate uptake, nitrogen fixation, and mixing of different organic matter sources. The apparent N-isotope enrichment (epsilon) associated with nitrate assimilation varied with epsilon = - 1.0parts per thousand +/- 0.9 for diatoms and epsilon = - 3.4parts per thousand +/- 0.4 for green algae. The mechanisms controlling the N-isotopic composition of surface-water nitrate include the combined processes of nitrate assimilation, nitrification, mixing of water masses, and external nitrate loading. There was no consistent relation between the delta(15)N of POM, the delta(15)N of nitrate, and the nitrate concentration in surface waters. Low delta(13)C (-60parts per thousand) of POM from the benthic nepheloid layer (BNL) indicated that as much as 80% of the POM in the BNL consisted of methanotrophic bacteria. The delta(13)C and delta(15)N of near-bottom POM allowed tracing a "bacteriocline", which rose with the expanding volume of bottom-water suboxia. Associated with the development of anaerobic conditions and coupled to decreasing [NO3-], the delta(15)N of bottom-water nitrate progressively increased from +8parts per thousand to +27parts per thousand, indicating active denitrification in the hypolimnion. This study demonstrates the potential of natural-abundance level measurements of stable carbon and nitrogen isotopes to trace biogeochemical processes in lakes. However, the delta(15)N of POM in eutrophic lakes is of limited use as an indicator of the degree of nitrate utilization and trophic state.