Characterization of the complete chloroplast genome of Sophora tonkinensis Gagnep.

被引：0

作者：

Zhang, Wenlong ^{[1
]}

Liu, Liping ^{[2
]}

Wang, Jianke ^{[1
]}

Li, Li ^{[3
]}

Li, Guohong ^{[3
]}

机构：

[1] Guizhou Univ Tradit Chinese Med, Pharmaceut Coll, Guiyang 550025, Guizhou, Peoples R China

[2] Guizhou Polytech Coll Commun, Dept Informat Engn, Qingzhen, Guizhou, Peoples R China

[3] Guizhou Normal Univ, Sch Life Sci, Guiyang, Guizhou, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 01期

关键词：

Sophora tonkinensis; Shan Dou Gen; chloroplast genome; phylogenetic analysis; ALGORITHM;

D O I：

10.1080/23802359.2019.1622466

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

In this study, the complete chloroplast (cp) genome of Sophora tonkinensis Gagnep. was determined through Illumina sequencing method. The complete chloroplast genome of S. tonkinensis was 155,640 bp in length and contained a pair of IR regions (25,925 bp) separated by a small single copy region (18,205 bp) and a large single copy region (85,585 bp). The cp genome of S. tonkinensis encoded 127 genes including 84 protein-coding genes, 35 tRNA genes, and 8 ribosomal RNA genes. The overall GC content of S. tonkinensis cp genome is 36.4%. By phylogenetic analysis using the maximum-likelihood (ML) method, S. tonkinensis showed the closest relationship with Sophora flavescens.

引用

下载

页码：460 / 462

页数：3

共 50 条

[21] Correction to: Neuroprotective effect of naturally occurring RXR agonists isolated from Sophora tonkinensis Gagnep. on amyloid-β-induced cytotoxicity in PC12 cells
Wei Wang
Ken-ichi Nakashima
Takao Hirai
Makoto Inoue
Journal of Natural Medicines, 2019, 73 : 683 - 684
[22] The complete chloroplast genome sequence of Styrax tonkinensis Craib ex Hartwich (Styracaceae)
Xu, Xiaogang
Wang, Yabo
Tong, Lili
Zhang, Yaoqin
Xia, Chongli
MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (02): : 1481 - 1482
[23] The complete chloroplast genome of Sophora davidii (Fabaceae) and its phylogenetic implications
Sun, Huigai
Han, Xiaowei
Ma, Donglai
Li, Yang
Kang, Tian
Sun, Ruipeng
Zheng, Yuguang
Song, Junna
MITOCHONDRIAL DNA PART B-RESOURCES, 2022, 7 (03): : 503 - 504
[24] The complete chloroplast genome sequence of a vulnerable legume species Dalbergia tonkinensis prain in Vietnam
Lee, Changyoung
Kim, Yong-In
Kim, Soo-Yong
Tran The Bach
Eum, Sangmi
Nguyen Trung Thanh
Choi, Sangho
MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 2604 - 2605
[25] Characterization of the complete mitochondrial genome of shrubby sophora (Sophora flavescens Ait.)
Zhan, Wenlong
Fu Qingdu
Li, Guohong
MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01): : 696 - 697
[26] Anti-inflammatory effects of naturally occurring retinoid X receptor agonists isolated from Sophora tonkinensis Gagnep. via retinoid X receptor/liver X receptor heterodimers
Wang, Wei
Nakashima, Ken-ichi
Hirai, Takao
Inoue, Makoto
JOURNAL OF NATURAL MEDICINES, 2019, 73 (02) : 419 - 430
[27] Anti-inflammatory effects of naturally occurring retinoid X receptor agonists isolated from Sophora tonkinensis Gagnep. via retinoid X receptor/liver X receptor heterodimers
Wei Wang
Ken-ichi Nakashima
Takao Hirai
Makoto Inoue
Journal of Natural Medicines, 2019, 73 : 419 - 430
[28] The complete chloroplast genome assembly of Amorphophallus tonkinensis Engler and Gehrmann 1911 from southwestern China
Yin, Si
Chen, Huanhuan
Wu, Weijia
Gao, Yong
MITOCHONDRIAL DNA PART B-RESOURCES, 2024, 9 (05): : 592 - 596
[29] The complete chloroplast genome of Artocarpus tonkinensis, a tree native to China with diverse beneficial medicinal applications
Tang, Li-Ming
Liu, Xiu
Lin, Jian-Yong
Qin, Bo
Chen, Chong-Zheng
MITOCHONDRIAL DNA PART B-RESOURCES, 2022, 7 (01): : 4 - 5
[30] Complete chloroplast genome of Sophora alopecuroides (Papilionoideae): molecular structures, comparative genome analysis and phylogenetic analysis
Zha, Xi
Wang, Xiaoyang
Li, Jinrong
Gao, Fei
Zhou, Yijun
JOURNAL OF GENETICS, 2020, 99 (01)

← 1 2 3 4 5 →