Characterization of the complete chloroplast genome of Sophora tonkinensis Gagnep.

被引：0

作者：

Zhang, Wenlong ^{[1
]}

Liu, Liping ^{[2
]}

Wang, Jianke ^{[1
]}

Li, Li ^{[3
]}

Li, Guohong ^{[3
]}

机构：

[1] Guizhou Univ Tradit Chinese Med, Pharmaceut Coll, Guiyang 550025, Guizhou, Peoples R China

[2] Guizhou Polytech Coll Commun, Dept Informat Engn, Qingzhen, Guizhou, Peoples R China

[3] Guizhou Normal Univ, Sch Life Sci, Guiyang, Guizhou, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 01期

关键词：

Sophora tonkinensis; Shan Dou Gen; chloroplast genome; phylogenetic analysis; ALGORITHM;

D O I：

10.1080/23802359.2019.1622466

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

In this study, the complete chloroplast (cp) genome of Sophora tonkinensis Gagnep. was determined through Illumina sequencing method. The complete chloroplast genome of S. tonkinensis was 155,640 bp in length and contained a pair of IR regions (25,925 bp) separated by a small single copy region (18,205 bp) and a large single copy region (85,585 bp). The cp genome of S. tonkinensis encoded 127 genes including 84 protein-coding genes, 35 tRNA genes, and 8 ribosomal RNA genes. The overall GC content of S. tonkinensis cp genome is 36.4%. By phylogenetic analysis using the maximum-likelihood (ML) method, S. tonkinensis showed the closest relationship with Sophora flavescens.

引用

页码：460 / 462

页数：3

共 50 条

[1] The complete chloroplast genome sequence of the medicinal plant Sophora tonkinensis
Fan Wei
Danfeng Tang
Kunhua Wei
Fang Qin
Linxuan Li
Yang Lin
Yanxia Zhu
Aziz Khan
Muhammad Haneef Kashif
Jianhua Miao
[J]. Scientific Reports, 10
[2] The complete chloroplast genome sequence of the medicinal plant Sophora tonkinensis
Wei, Fan
Tang, Danfeng
Wei, Kunhua
Qin, Fang
Li, Linxuan
Lin, Yang
Zhu, Yanxia
Khan, Aziz
Kashif, Muhammad Haneef
Miao, Jianhua
[J]. SCIENTIFIC REPORTS, 2020, 10 (01)
[3] Study on Genomic DNA Extraction Method for Sophora Tonkinensis Gagnep. from Genuine Medicinal Material in Guangxi
TANG Mei-qiong
[J]. Medicinal Plant, 2010, (06) : 49 - 50
[4] Characterization of the complete chloroplast genome of shrubby sophora (Sophora flavescens Ait.)
Zhang, Wenlong
Li, Li
Li, Guohong
[J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2018, 3 (02): : 1282 - 1283
[5] Hypoglycemic Activity and the Potential Mechanism of the Flavonoid Rich Extract from Sophora tonkinensis Gagnep. in KK-Ay Mice
Huang, Mi
Deng, Shihao
Han, Qianqian
Zhao, Ping
Zhou, Qi
Zheng, Sijian
Ma, Xinhua
Xu, Chan
Yang, Jing
Yang, Xinzhou
[J]. FRONTIERS IN PHARMACOLOGY, 2016, 7
[6] iTRAQ-Based Proteomic and Physiological Analyses Reveal the Mechanisms of Dehydration and Cryopreservation Tolerance of Sophora tonkinensis Gagnep. Seeds
Luo, Yongjian
Zhang, Yixin
Jiang, Yu
Dai, Zhangyan
Li, Qing
Mou, Jiaolin
Xu, Li
Deng, Shiming
Li, Jitao
Wang, Ru
Liu, Jun
Deng, Zhijun
[J]. PLANTS-BASEL, 2023, 12 (09):
[7] The complete chloroplast genome sequence of Caryodaphnopsis tonkinensis
Zheng, Yuan
Luo, Yana
Li, Yunqing
Wang, Yi
[J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (01): : 204 - 205
[8] Flavonoids and phenolic acids from the roots of Sophora tonkinensis Gagnep
Hou, Mengyang
Hu, Wenzhong
Hao, Kexin
Xiu, Zhilong
[J]. BIOCHEMICAL SYSTEMATICS AND ECOLOGY, 2020, 89
[9] Matrine-Type Alkaloids with Anti-Tomato Spotted Wilt Virus Activity from the Root of Sophora tonkinensis Gagnep.
Zhao, Li-Hua
Hu, Zhan-Xing
Hao, Xiao-Jiang
Zhang, Peng
Zhang, Ji
An, Qiao
Wang, Juan
Yi, Ping
Yuan, Chun-Mao
Zhang, Zhong-Kai
[J]. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 2023, 71 (10) : 4394 - 4407
[10] Cytotoxic diterpenoids from Vietnamese medicinal plant Croton tonkinensis Gagnep.
Giang, PM
Son, PT
Hamada, Y
Otsuka, H
[J]. CHEMICAL & PHARMACEUTICAL BULLETIN, 2005, 53 (03) : 296 - 300

← 1 2 3 4 5 →