Nonequilibrium self-assembly dynamics of icosahedral viral capsids packaging genome or polyelectrolyte

被引:52
|
作者
Chevreui, Maelenn [1 ,2 ]
Law-Hine, Didier [1 ]
Chen, Jingzhi [1 ]
Bressanelli, Stephane [2 ]
Combet, Sophie [3 ]
Constantin, Doru [1 ]
Degrouard, Jeril [1 ]
Moller, Johannes [4 ]
Zeghal, Mehdi [1 ]
Tresset, Guillaume [1 ]
机构
[1] Univ Paris Saclay, Univ Paris Sud, Lab Phys Solides, CNRS, F-91405 Orsay, France
[2] Univ Paris Saclay, Univ Paris Sud, I2BC, CNRS,CEA, F-91198 Gif Sur Yvette, France
[3] Univ Paris Saclay, LLB, CEA Saclay, UMR CEA CNRS 12, F-91191 Gif Sur Yvette, France
[4] ESRF, 71 Ave Martyrs, F-38000 Grenoble, France
来源
NATURE COMMUNICATIONS | 2018年 / 9卷
关键词
VIRUS-LIKE PARTICLES; CRYOELECTRON MICROSCOPY; PLANT-VIRUS; PROTEIN; RNA; PATHWAY; NANOPARTICLES; RECONSTRUCTION; TEMPLATES; MECHANISM;
D O I
10.1038/s41467-018-05426-8
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The survival of viruses partly relies on their ability to self-assemble inside host cells. Although coarse-grained simulations have identified different pathways leading to assembled virions from their components, experimental evidence is severely lacking. Here, we use timeresolved small-angle X-ray scattering to uncover the nonequilibrium self-assembly dynamics of icosahedral viral capsids packaging their full RNA genome. We reveal the formation of amorphous complexes via an en masse pathway and their relaxation into virions via a synchronous pathway. The binding energy of capsid subunits on the genome is moderate (similar to 7k(B)T(o), with k(B) the Boltzmann constant and T-o = 298 K, the room temperature), while the energy barrier separating the complexes and the virions is high (similar to 20k(B)T(o)). A synthetic polyelectrolyte can lower this barrier so that filled capsids are formed in conditions where virions cannot build up. We propose a representation of the dynamics on a free energy landscape.
引用
收藏
页数:9
相关论文
共 50 条
  • [1] Nonequilibrium self-assembly dynamics of icosahedral viral capsids packaging genome or polyelectrolyte
    Maelenn Chevreuil
    Didier Law-Hine
    Jingzhi Chen
    Stéphane Bressanelli
    Sophie Combet
    Doru Constantin
    Jéril Degrouard
    Johannes Möller
    Mehdi Zeghal
    Guillaume Tresset
    Nature Communications, 9
  • [2] Nonequilibrium Self-Assembly Dynamics of Icosahedral Viral Capsids Packaging Genome
    Chevreuil, Maelenn
    Law-Hine, Didier
    Chen, Jingzhi
    Bressanelli, Stephane
    Combet, Sophie
    Constantin, Doru
    Degrouard, Jeril
    Moller, Johannes
    Zeghal, Mehdi
    Tresset, Guillaume
    BIOPHYSICAL JOURNAL, 2018, 114 (03) : 60A - 60A
  • [4] Dynamics of Self-assembly of Model Viral Capsids in the Presence of a Fluctuating Membrane
    Matthews, Richard
    Likos, Christos N.
    JOURNAL OF PHYSICAL CHEMISTRY B, 2013, 117 (27): : 8283 - 8292
  • [5] Measurements of the self-assembly kinetics of individual viral capsids around their RNA genome
    Garmann, Rees F.
    Goldfain, Aaron M.
    Manoharan, Vinothan N.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2019, 116 (45) : 22485 - 22490
  • [6] Deciphering the kinetic mechanism of spontaneous self-assembly of icosahedral capsids
    Nguyen, Hung D.
    Reddy, Vijay S.
    Brooks, Charles L., III
    NANO LETTERS, 2007, 7 (02) : 338 - 344
  • [7] Structural studies of the self-assembly and stability of viral capsids
    Nguyen, Hung D.
    Brooks, Charles L., III
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2006, 232 : 684 - 684
  • [8] Genome packaging within icosahedral capsids and large-scale segmentation in viral genomic sequences
    Chechetkin, V. R.
    Lobzin, V. V.
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2019, 37 (09): : 2322 - 2338
  • [9] The Effect of RNA Secondary Structure on the Self-Assembly of Viral Capsids
    Beren, Christian
    Dreesens, Lisa L.
    Liu, Katherine N.
    Knobler, Charles M.
    Gelbart, William M.
    BIOPHYSICAL JOURNAL, 2017, 113 (02) : 339 - 347
  • [10] Self-Assembly of 2D Viral Capsids with Oscillatory Interactions
    Swartley, Jacob R.
    Niblo, Jessica
    Zhang, Zhongmin
    DuBay, Kateri H.
    BIOPHYSICAL JOURNAL, 2019, 116 (03) : 570A - 570A