The complete chloroplast genome of Cinnamomum kanehirae Hayata (Lauraceae)

被引:14
|
作者
Wu, Chia-Chen [1 ]
Ho, Cheng-Kuen [1 ]
Chang, Shu-Hwa [1 ]
机构
[1] Taiwan Forestry Res Inst, Silviculture Div, 53 Nanhai Rd, Taipei 10066, Taiwan
关键词
Antrodia cinnamomea; chloroplast genome; Cinnamomum kanehirae; Lauraceae; next-generation sequence; ANNOTATION;
D O I
10.3109/19401736.2015.1043541
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The complete chloroplast genome of Cinnamomum kanehirae (Hayata), the first to be completely sequenced of Lauraceae family, is presented in this study. The total genome size is 152,700 bp, with a typical circular structure including a pair of inverted repeats (IRa/b) of 20,107 bp of length separated by a large single-copy region (LSC) and a small single-copy region (SSC) of 93,642 bp and 18,844 bp of length, respectively. The overall GC content of the genome is 39.1%. The nucleotide sequence shows 91% identities with Liriodendron tulipifera in the Magnoliaceae. In total, 123 annotated genes consisted of 79 coding genes, eight rRNA genes, and 36 tRNA genes. Among all 79 coding genes, seven genes (rpoC1, atpF, rpl2, ndhB, ndhA, rps16, and rpl2) contain one intron, while two genes (ycf3 and clpP) contain two introns. The maximum likelihood phylogenetic analysis revealed that C. kanehirae chloroplast genome is closely related to Calycanthus fertilis within Laurales order.
引用
收藏
页码:2681 / 2682
页数:2
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