Structural aspects of the clustering of curcumin molecules in water. Molecular dynamics computer simulation study

被引:1
|
作者
Patsahan, T. [1 ]
Pizio, O. [2 ]
机构
[1] Natl Acad Sci Ukraine, Inst Condensed Matter Phys, 1 Svientsitskii St, UA-79011 Lvov, Ukraine
[2] Univ Nacl Autonoma Mexico, Inst QuIrn, Cd Mx 04510, Mexico
关键词
curcumin; united atom model; molecular dynamics; water; clusters; VIRIAL-COEFFICIENTS; DOCKING; DISEASE; MODEL; OPLS;
D O I
10.5488/CMP.25.23201
中图分类号
O469 [凝聚态物理学];
学科分类号
070205 ;
摘要
We explore clustering of curcumin molecules in water by using the OPLS-UA model for the enol conformer of curcumin (J. Mol. Liq., 223, 707, 2016) and the SPC-E water model. With this purpose, solutions of 2, 4, 8, 12, 16 and 20 curcumin molecules in 3000 water molecules are studied by using extensive molecular dynamics computer simulations. Radial distributions for the centers of mass of curcumin molecules are evaluated and the running coordination numbers are analyzed. The formation of clusters on time is elucidated. The internal structure of molecules within the cluster is described by using radial distributions of the elements of the curcumin molecule, the orientation descriptors, the order parameter and the radius of gyration. The self-diffusion coefficient of solute molecules in clusters is evaluated. The distribution of water species around clusters is described in detail. A comparison of our findings with computer simulation results of other authors is performed. A possibility to relate predictions of the model with experimental observations is discussed.
引用
收藏
页数:16
相关论文
共 50 条
  • [21] Structure and dynamics of water at water|Pt interface as seen by molecular dynamics computer simulation
    Yeh, IC
    Berkowitz, ML
    JOURNAL OF ELECTROANALYTICAL CHEMISTRY, 1998, 450 (02) : 313 - 325
  • [22] Investigation of the Behavior of Dioxadet Molecules in Water by Molecular Dynamics Simulation
    Yakush, E. A.
    Kim, A. V.
    Medvedev, N. N.
    RUSSIAN JOURNAL OF PHYSICAL CHEMISTRY B, 2024, 18 (01) : 252 - 257
  • [23] Dynamics of water molecules at the surface of an aqueous micelle: Atomistic molecular dynamics simulation study of a complex system
    Balasubramanian, S
    Pal, S
    Bagchi, B
    CURRENT SCIENCE, 2002, 82 (07): : 845 - 854
  • [24] Molecular Dynamics Study on the Thermal Aspects of the Effect of Water Molecules at the Adhesive Interface on an Adhesive Structure
    Nakamura, Shin
    Tsuji, Yuta
    Yoshizawa, Kazunari
    LANGMUIR, 2021, 37 (50) : 14724 - 14732
  • [25] Molecular Dynamics Simulation of Significant Roles of Structural Water Molecules in Glycogen Synthase Kinase-3β
    Sun Hao
    Jiang Yong-Jun
    Yu Qing-Sen
    Zou Jian-Wei
    ACTA PHYSICO-CHIMICA SINICA, 2009, 25 (04) : 635 - 639
  • [26] Understanding interaction and dynamics of water molecules in the epoxy via molecular dynamics simulation
    Tam, Lik-ho
    Lau, Denvid
    Wu, Chao
    MOLECULAR SIMULATION, 2019, 45 (02) : 120 - 128
  • [27] Long-range structures in bulk water. A molecular dynamics study
    Kohlmeyer, A
    Witschel, W
    Spohr, E
    ZEITSCHRIFT FUR NATURFORSCHUNG SECTION A-A JOURNAL OF PHYSICAL SCIENCES, 1997, 52 (05): : 432 - 434
  • [28] Long-range Structures in Bulk Water. A Molecular Dynamics Study
    Kohlmeyer, A.
    Witschel, W.
    Spohr, E.
    Zeitschrift fuer Naturforschung. Section A: Physical Sciences, 52 (05):
  • [29] Hydration of methanol in water. A DFT-based molecular dynamics study
    van Erp, TS
    Meijer, EJ
    CHEMICAL PHYSICS LETTERS, 2001, 333 (3-4) : 290 - 296
  • [30] Molecular Interactions in the Systems Composed of Curcumin, Water and Single-Walled Carbon Nanotube: A Molecular Dynamics Simulation Study
    Bonab, Masoumeh Ighaei
    Sardroodi, Jaber Jahhanbin
    Ebrahimzadeh, Alireza Rastkar
    Mehrnejad, Faramarz
    JOURNAL OF COMPUTATIONAL AND THEORETICAL NANOSCIENCE, 2015, 12 (09) : 2077 - 2083