Structural aspects of the clustering of curcumin molecules in water. Molecular dynamics computer simulation study

被引:1
|
作者
Patsahan, T. [1 ]
Pizio, O. [2 ]
机构
[1] Natl Acad Sci Ukraine, Inst Condensed Matter Phys, 1 Svientsitskii St, UA-79011 Lvov, Ukraine
[2] Univ Nacl Autonoma Mexico, Inst QuIrn, Cd Mx 04510, Mexico
关键词
curcumin; united atom model; molecular dynamics; water; clusters; VIRIAL-COEFFICIENTS; DOCKING; DISEASE; MODEL; OPLS;
D O I
10.5488/CMP.25.23201
中图分类号
O469 [凝聚态物理学];
学科分类号
070205 ;
摘要
We explore clustering of curcumin molecules in water by using the OPLS-UA model for the enol conformer of curcumin (J. Mol. Liq., 223, 707, 2016) and the SPC-E water model. With this purpose, solutions of 2, 4, 8, 12, 16 and 20 curcumin molecules in 3000 water molecules are studied by using extensive molecular dynamics computer simulations. Radial distributions for the centers of mass of curcumin molecules are evaluated and the running coordination numbers are analyzed. The formation of clusters on time is elucidated. The internal structure of molecules within the cluster is described by using radial distributions of the elements of the curcumin molecule, the orientation descriptors, the order parameter and the radius of gyration. The self-diffusion coefficient of solute molecules in clusters is evaluated. The distribution of water species around clusters is described in detail. A comparison of our findings with computer simulation results of other authors is performed. A possibility to relate predictions of the model with experimental observations is discussed.
引用
收藏
页数:16
相关论文
共 50 条
  • [1] On the properties of the curcumin molecule in water. Exploration of the OPLS - United atom model by molecular dynamics computer simulation
    Ilnytskyi, Jaroslav
    Patsahan, Taras
    Pizio, Orest
    JOURNAL OF MOLECULAR LIQUIDS, 2016, 223 : 707 - 715
  • [2] Aspects of the microscopic structure of curcumin solutions with water-dimethylsulfoxide solvent. Molecular dynamics computer simulation study
    Patsahan, T.
    Pizio, O.
    CONDENSED MATTER PHYSICS, 2023, 26 (03)
  • [3] Structural and dynamical aspects of uranyl ions in supercritical water: A molecular dynamics simulation study
    Chopra, Manish
    Choudhury, Niharendu
    JOURNAL OF MOLECULAR LIQUIDS, 2016, 224 : 599 - 606
  • [4] Molecular dynamics simulation study of the structural characteristics of water molecules confined in functionalized carbon nanotubes
    Huang, Liang-Liang
    Zhang, Lu-Zheng
    Shao, Qing
    Wang, Jun
    Lu, Ling-Hong
    Lu, Xiao-Hua
    Jiang, Shao-Yi
    Shen, Wen-Feng
    JOURNAL OF PHYSICAL CHEMISTRY B, 2006, 110 (51): : 25761 - 25768
  • [5] A first principles molecular dynamics simulation of magnesium ion in water.
    Lightstone, FC
    Schwegler, E
    Hood, RQ
    Gygi, F
    Galli, G
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2001, 221 : U410 - U410
  • [6] Molecular dynamics of diffusion in water.
    Dempsey, GL
    Gainer, JL
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2002, 223 : U486 - U486
  • [7] Dynamics of molecular recognition in water.
    McCammon, JA
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2001, 221 : U232 - U232
  • [8] Structural study of supercritical water. II. Computer simulations
    Matubayasi, N
    Wakai, C
    Nakahara, M
    JOURNAL OF CHEMICAL PHYSICS, 1999, 110 (16): : 8000 - 8011
  • [9] Solvation in supercritical water: A molecular dynamics computer simulation study.
    Bursulaya, BD
    Kim, HJ
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1998, 215 : U173 - U174
  • [10] Structural Arrangement of Water Molecules around Highly Charged Nanoparticles: Molecular Dynamics Simulation
    Kim, Eunae
    Yeom, Min Sun
    BULLETIN OF THE KOREAN CHEMICAL SOCIETY, 2014, 35 (05) : 1501 - 1505