Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov.

被引：32

作者：

Merla, Cristina ^{[1
,2
]}

Rodrigues, Carla ^{[3
]}

Passet, Virginie ^{[3
]}

Corbella, Marta ^{[1
]}

Thorpe, Harry A. ^{[4
]}

Kallonen, Teemu V. S. ^{[5
,6
]}

Zong, Zhiyong ^{[7
]}

Marone, Piero ^{[1
]}

Bandi, Claudio ^{[8
,9
]}

Sassera, Davide ^{[10
]}

Corander, Jukka ^{[5
,6
,11
]}

Feil, Edward J. ^{[4
]}

Brisse, Sylvain ^{[3
]}

机构：

[1] Fdn IRCCS Policlin San Matteo, Unita Operat Complessa Microbiol & Virol, Pavia, Italy

[2] Univ Pavia, Scuola Specializaz Microbiol & Virol, Pavia, Italy

[3] Inst Pasteur, Biodivers & Epidemiol Bacterial Pathogens, Paris, France

[4] Univ Bath, Milner Ctr Evolut, Dept Biol & Biochem, Bath, Avon, England

[5] Wellcome Sanger Inst, Infect Genom, Cambridge, England

[6] Univ Oslo, Dept Biostat, Oslo, Norway

[7] Sichuan Univ, West China Hosp, Ctr Infect Dis, Chengdu, Sichuan, Peoples R China

[8] Univ Milan, Dept Biosci, Milan, Italy

[9] Univ Milan, Pediat Clin Res Ctr Romeo ed Enrica Invernizzi, Milan, Italy

[10] Univ Pavia, Dipartimento Biol & Biotecnol L Spallanzani, Pavia, Italy

[11] Univ Helsinki, HIIT, Dept Math & Stat, Helsinki, Finland

来源：

FRONTIERS IN MICROBIOLOGY | 2019年 / 10卷

基金：

欧盟地平线“2020”;

关键词：

Klebsiella oxytoca complex; phylogeny; taxonomy; genome sequencing; bla(OXY); MALDI-ToF mass spectrometry; BETA-LACTAMASE; 16S RDNA; OXYTOCA; PNEUMONIAE; DIVERSITY; LINEAGES;

D O I：

10.3389/fmicb.2019.02360

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Klebsiella oxytoca causes opportunistic human infections and post-antibiotic haemorrhagic diarrhea. This Enterobacteriaceae species is genetically heterogeneous and is currently subdivided into seven phylogroups (Ko1 to Ko4 and Ko6 to Ko8). Here we investigated the taxonomic status of phylogroups Ko3 and Ko4. Genomic sequence-based phylogenetic analyses demonstrate that Ko3 and Ko4 formed well-defined sequence clusters related to, but distinct from, Klebsiella michiganensis (Ko1), K. oxytoca (Ko2), K. huaxiensis (Ko8), and K. grimontii (Ko6). The average nucleotide identity (ANI) of Ko3 and Ko4 were 90.7% with K. huaxiensis and 95.5% with K. grimontii, respectively. In addition, three strains of K. huaxiensis, a species so far described based on a single strain from a urinary tract infection patient in China, were isolated from cattle and human feces. Biochemical and MALDI-ToF mass spectrometry analysis allowed differentiating Ko3, Ko4, and Ko8 from the other K. oxytoca species. Based on these results, we propose the names Klebsiella spallanzanii for the Ko3 phylogroup, with SPARK_775_C1(T) (CIP 111695(T) and DSM 109531(T)) as type strain, and Klebsiella pasteurii for Ko4, with SPARK_836_C1(T) (CIP 111696(T) and DSM 109530(T)) as type strain. Strains of K. spallanzanii were isolated from human urine, cow feces, and farm surfaces, while strains of K. pasteurii were found in fecal carriage from humans, cows, and turtles.

引用

页数：9

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[J]. MYCOTAXON, 1997, 64 : 467 - 484

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